BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2378465 =	234 (1.150)	13 (0.070)	7/140	NT	6.9%	intergenic (+324/+95)	glcU_2/USA300HOU_RS12220	putative glucose uptake protein GlcU/hypothetical protein
*	?	USA300TCH1516_ALE	2378512 =	149 (0.840)	13 (0.070)	7/140	NT	6.9%	intergenic (+371/+48)	glcU_2/USA300HOU_RS12220	putative glucose uptake protein GlcU/hypothetical protein

Only 100 of 252 total aligned reads displayed.

ATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACTA  >  USA300TCH1516_ALE/2378422‑2378602

aTCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGctc                                                                                            <  1:2832229/91‑1 (MQ=255)

 tCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGctct                                                                                           <  1:2309733/91‑1 (MQ=255)

 tCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGctct                                                                                           <  1:3943177/91‑1 (MQ=255)

 tCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGctct                                                                                           >  2:1874158/1‑91 (MQ=255)

 tCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGctct                                                                                           >  2:1426680/1‑91 (MQ=255)

 catttgaaaataaaatccattttagtattcgtagaaaatgagAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGctct                                                                                           >  1:3904413‑M1/43‑91 (MQ=255)

  cAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCtctc                                                                                          <  2:2199487/91‑1 (MQ=255)

    aCTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAt                                                                                        <  1:1723024/91‑1 (MQ=255)

     cTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAtt                                                                                       <  1:192178/91‑1 (MQ=255)

     cTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAtt                                                                                       <  1:2103228/91‑1 (MQ=255)

     cTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCAtt                                                                                       <  1:2143035/91‑1 (MQ=255)

     cTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGATCTCAtt                                                                                       >  2:3510092/1‑91 (MQ=255)

          aTGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTa                                                                                  >  2:2092445/1‑91 (MQ=255)

          aTGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTa                                                                                  <  2:3945833/91‑1 (MQ=255)

          aTGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTa                                                                                  >  1:1048900/1‑91 (MQ=255)

             tATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGa                                                                               >  1:1536608/1‑91 (MQ=255)

              aTGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGaa                                                                              <  1:2015071/91‑1 (MQ=255)

               tGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAAt                                                                             >  2:2704513/1‑91 (MQ=255)

               tGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAAt                                                                             >  1:3848642/1‑91 (MQ=255)

               tGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAAt                                                                             >  1:1615866/1‑91 (MQ=255)

               tGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATACACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAAt                                                                             >  1:3138937/1‑91 (MQ=255)

               tGAGTTGAACAACTATGCCATAAATAAAAGCCCCCTTTTCACAATATACACTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAAt                                                                             >  2:1758758/1‑91 (MQ=255)

                 aGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATAc                                                                           <  1:3094382/91‑1 (MQ=255)

                 aGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATAc                                                                           <  1:562624/91‑1 (MQ=255)

                 aGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATAc                                                                           >  1:290243/1‑91 (MQ=255)

                   ttGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTa                                                                         <  2:3622383/91‑1 (MQ=255)

                    tGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTaa                                                                        >  1:3784059/1‑91 (MQ=255)

                    tGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTaa                                                                        >  1:666492/1‑91 (MQ=255)

                       acaacTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTGAAGGGGGCTCTCATTTTCTACGACTACTAAAAt                                                                     >  1:1275846/1‑91 (MQ=255)

                        caacTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATg                                                                    <  2:2423728/91‑1 (MQ=255)

                         aacTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATgg                                                                   <  1:2861281/91‑1 (MQ=255)

                          acTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGa                                                                  <  2:904477/91‑1 (MQ=255)

                           cTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGat                                                                 >  1:953471/1‑91 (MQ=255)

                           cTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGat                                                                 >  2:2950273/1‑91 (MQ=255)

                           cTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGat                                                                 <  2:283857/91‑1 (MQ=255)

                           cTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGat                                                                 <  1:371338/91‑1 (MQ=255)

                             aTGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGattt                                                               >  1:1880503/1‑91 (MQ=255)

                             aTGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGattt                                                               >  1:1880536/1‑91 (MQ=255)

                              tGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGatttt                                                              >  1:2191115/1‑91 (MQ=255)

                              tGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGacttt                                                              >  1:3562459/1‑91 (MQ=255)

                               gTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGatttta                                                             <  1:2449574/91‑1 (MQ=255)

                               gTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGatttta                                                             >  2:2370346/1‑91 (MQ=255)

                                 cATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGattttatt                                                           <  1:3881735/91‑1 (MQ=255)

                                 cATAAATAAAAGCCCCCTTGTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGattttatt                                                           <  2:3462490/91‑1 (MQ=255)

                                    aaataaaAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCCACGAATACTAAAATGGATTTTATTTTc                                                        >  2:3829961/1‑91 (MQ=255)

                                      ataaaAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCaa                                                      <  1:2404573/91‑1 (MQ=255)

                                       taaaAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCaaa                                                     <  1:2008820/91‑1 (MQ=255)

                                          aaGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAAtgt                                                  >  2:101841/1‑91 (MQ=255)

                                          aaGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAAtgt                                                  <  1:2294240/91‑1 (MQ=255)

                                           AGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAAtgtg                                                 >  1:23145‑M1/1‑91 (MQ=255)

                                            GCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAACATGGATGTTATTTTCAAATgtgt                                                <  2:3030773‑M1/91‑1 (MQ=255)

                                            GCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATgtgt                                                <  1:1213470‑M1/91‑1 (MQ=255)

                                            GCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATgtgt                                                <  2:94239‑M1/91‑1 (MQ=255)

                                             CCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTa                                               >  1:3937222‑M1/1‑91 (MQ=255)

                                             CCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCCCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTa                                               <  2:3102582‑M1/91‑1 (MQ=255)

                                              CCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTaa                                              <  1:3393523‑M1/91‑1 (MQ=255)

                                              CCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTaa                                              <  2:766036‑M1/91‑1 (MQ=255)

                                               CCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTaaa                                             <  1:1935330‑M1/91‑1 (MQ=255)

                                               CCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTaaa                                             >  2:372494‑M1/1‑91 (MQ=255)

                                                CCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAAc                                            <  1:1832470‑M1/91‑1 (MQ=255)

                                                CCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAAc                                            >  2:2990768‑M1/1‑91 (MQ=255)

                                                  tttaccacaatatgtaaatgtatattgtgaaaagggggctCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTa                                          >  2:2937567‑M2/41‑91 (MQ=255)

                                                   TTTCACAATATACATTTACATATTGCGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAg                                         >  1:3683200‑M1/1‑91 (MQ=255)

                                                     tCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAgcc                                       >  2:3299375/1‑89 (MQ=255)

                                                     tCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGAc                                       <  2:685858/91‑1 (MQ=255)

                                                     tCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGAc                                       >  2:2797438/1‑91 (MQ=255)

                                                      ccacaatatgtaaatgtatattgtgaaaagggggctTTTATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACa                                      >  2:1932394‑M2/37‑91 (MQ=255)

                                                      ccacaatatggaaatgtatattgtgaaaagggggcgCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACa                                      >  2:1174008‑M2/37‑91 (MQ=255)

                                                      cacaATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACa                                      <  2:1671397/91‑1 (MQ=255)

                                                      cacaATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACa                                      <  2:1543848/91‑1 (MQ=255)

                                                      cacaATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACa                                      <  1:90387/91‑1 (MQ=255)

                                                       cacaatatgtaaatgtatattgtgaaaagggggctCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACaa                                     >  1:80584‑M2/36‑91 (MQ=255)

                                                       acaATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACaa                                     <  2:2467075/91‑1 (MQ=255)

                                                       acaATATACATTTACATATCGTGGCCAAGGGGGCCCTCATTTTCTACGAATACTAAAATGGCTTTTATTCTCAAATCTCTAAACTAGACaa                                     >  2:2307736/1‑91 (MQ=255)

                                                          aatatgtaaatgtatattgtgaaaagggggctCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAaca                                  >  2:1331799‑M2/33‑91 (MQ=255)

                                                           tataCATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAacac                                 <  1:109312/91‑1 (MQ=255)

                                                           tataCATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAacac                                 <  1:14747/91‑1 (MQ=255)

                                                           tataCATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAacac                                 <  1:2913621/91‑1 (MQ=255)

                                                               cATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGcc                             <  2:2557940/91‑1 (MQ=255)

                                                               cATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGcc                             >  1:1673983/1‑91 (MQ=255)

                                                               cATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGcc                             >  1:3486893/1‑91 (MQ=255)

                                                                 tttACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTg                           <  1:2589626/91‑1 (MQ=255)

                                                                 tttACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTg                           >  2:452907/1‑91 (MQ=255)

                                                                         ttGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGt                   <  2:2620049/91‑1 (MQ=255)

                                                                         ttGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGt                   >  2:2016844/1‑91 (MQ=255)

                                                                          tgtgGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTa                  >  1:3267184/1‑91 (MQ=255)

                                                                             ggTAAAGGGGGCTCTCATTTTCTCCGCATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACaa               >  2:2773528/1‑91 (MQ=255)

                                                                             ggTAAAGGGGGCTCTCATTTTCTATGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACaa               >  2:2217195/1‑91 (MQ=255)

                                                                             ggTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACaa               >  2:804977/1‑91 (MQ=255)

                                                                               tAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACaaaa             <  2:1189751/91‑1 (MQ=255)

                                                                                aaagggggctCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAaat            >  2:2995715‑M2/11‑91 (MQ=255)

                                                                                aaagggggctCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAaat            <  2:1380421‑M2/81‑1 (MQ=255)

                                                                                    ggggctCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATg        <  1:860543‑M2/85‑1 (MQ=255)

                                                                                     gggctCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGa       <  1:3090938‑M2/86‑1 (MQ=255)

                                                                                      ggctCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGAt      <  1:3401901‑M2/87‑1 (MQ=255)

                                                                                        ctCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATAc    <  2:174868‑M2/89‑1 (MQ=255)

                                                                                         tCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACt   >  2:115144‑M2/2‑91 (MQ=255)

                                                                                         tCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACt   >  2:532526‑M2/2‑91 (MQ=255)

                                                                                          ctcATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACta  <  1:2754916/91‑1 (MQ=255)

                                                                                          ctcATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACta  <  1:2754760/91‑1 (MQ=255)

ATCAACTTGAATGTATGAGTTGAACAACTATGTCATAAATAAAAGCCCCCTTTTCACAATATACATTTACATATTGTGGTAAAGGGGGCTCTCATTTTCTACGAATACTAAAATGGATTTTATTTTCAAATGTGTAAACTAGACAAACACTGCCTGATACACGTACAAAATAATGATACTA  >  USA300TCH1516_ALE/2378422‑2378602

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.