BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2442821	122 (0.600)	33 (0.200)	12/128	NT	24.1%	intergenic (+18/+40)	glvR/USA300HOU_RS12585	HTH‑type transcriptional regulator GlvR/hypothetical protein
*	?	USA300TCH1516_ALE	= 2442838	111 (0.680)	33 (0.200)	12/128	NT	24.1%	intergenic (+35/+23)	glvR/USA300HOU_RS12585	HTH‑type transcriptional regulator GlvR/hypothetical protein

Only 100 of 131 total aligned reads displayed.

TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/2442716‑2442821

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggaagttatgatAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGTT  <  USA300TCH1516_ALE/2442838‑2442749

TTCTAGCTTCGTCAGTTATTATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATAAGAAA                                                                                                           <  2:2551457/91‑1

TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAA                                                                                                           <  2:1944643/91‑1

TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAA                                                                                                           >  1:1161435/1‑91

 TCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAA                                                                                                          >  1:819676/1‑91

 TCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAA                                                                                                          <  2:148910/91‑1

  CTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAA                                                                                                         >  2:3420255/1‑91

  CTAGCTTCATAAGTTATCATATAGTCGTTGAAACACTTGTAAAAAAATATAATGAGTATTTACTACATAATGATATAAAAAAATAAAAAAA                                                                                                         <  2:910402/91‑1

   TAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGCGTATTTACTACATAATGATATTTCAAATTAGAAAAAA                                                                                                        >  2:2297118/1‑91

    AGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAG                                                                                                       >  2:2226373/1‑91

    AGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAG                                                                                                       >  2:3296282/1‑91

     GCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGG                                                                                                      >  1:346035/1‑91

     GCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGG                                                                                                      <  1:3088522/91‑1

      CTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAAATAGAAAAAAGGA                                                                                                     <  2:3161174/91‑1

        TCATCAGTTATCATATATTCTTAGAAACACTTATAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAG                                                                                                   <  2:568948/91‑1

          ATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTT                                                                                                 >  1:3753990/1‑91

           TCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTA                                                                                                <  2:2374997/91‑1

            CAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTAT                                                                                               <  1:3913799/91‑1

            CAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTAT                                                                                               >  2:2446468/1‑91

            CAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTAAAAAATAGAAAAAAGGAAGTTAT                                                                                               <  2:1273369/91‑1

             AGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATG                                                                                              <  1:1676231/91‑1

             AGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATG                                                                                              <  1:3046269/91‑1

             AGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATG                                                                                              >  1:1892223/1‑91

              GTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGA                                                                                             <  1:734364/91‑1

              GTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGA                                                                                             >  1:2775972/1‑91

              GTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAAAGAGTATTTACTACATAATGATATTTCAAA‑TAGAAAAAAGGAAGTTATGAT                                                                                            <  2:3429394/91‑1

               TTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT                                                                                            >  1:422587/1‑91

               TTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT                                                                                            >  1:2685744/1‑91

                               GAAGCACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTA                                                                            <  1:3118901/91‑1

                                  ACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAAT                                                                         <  2:3238168/91‑1

                                  ACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAAT                                                                         <  2:2434548/91‑1

                                  ACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAAT                                                                         <  1:1471178/91‑1

                                  ACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAAT                                                                         <  1:827988/91‑1

                                    ACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCA                                                                       <  2:477480/91‑1

                                    ACTTGTAAGAAAATATAATGAGTATTTACGACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCA                                                                       <  2:784811/91‑1

                                     CTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCAT                                                                      <  1:2583882/91‑1

                                     CTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCAT                                                                      <  1:1403149/91‑1

                                     CTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCAT                                                                      <  1:1711498/91‑1

                                      TTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATA                                                                     <  1:1295722/91‑1

                                       TGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA                                                                    <  1:1086954/91‑1

                                       TGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA                                                                    <  1:3030454/91‑1

                                       TGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAA                                                                    <  1:3464873/91‑1

                                         TAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT                                                                  <  2:1235201/91‑1

                                         TAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACT                                                                  <  1:1182838/91‑1

                                          AAGAAAATATGATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTT                                                                 <  1:1743602/91‑1

                                          AAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTT                                                                 <  1:1749198/91‑1

                                           atAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTC                                                                <  2:3613389/89‑1

                                              AAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTT                                                             <  2:3465934/91‑1

                                              AAATATAATGAGTATTTACTACATAATGATATTTCAAATTAAAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTT                                                             <  2:3468235/91‑1

                                               AATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTT                                                            <  2:1511623/91‑1

                                                                            ATTTCAAATTATAAAAAAGGAAGTTATGATAGGCTCAAGGACATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTA                               <  2:3279021/91‑1

                                                                                          AAAAGGTAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATAT                 <  2:3473606/91‑1

                                                                                          AAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATAGTCATTGTAT                 >  1:3551638/1‑91

                                                                                          AAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATAT                 >  1:357784/1‑91

                                                                                          AAAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACGTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATAT                 <  2:3474139/91‑1

                                                                                           AAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATT                >  1:3840227/1‑91

                                                                                           AAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATT                <  2:2471125/91‑1

                                                                                           AAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATT                >  2:1703983/1‑91

                                                                                           AAAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATT                >  1:3840211/1‑91

                                                                                            AAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTT               >  2:3277813/1‑91

                                                                                            AAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTT               <  2:1933733/91‑1

                                                                                            AAGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTT               >  2:3451029/1‑91

                                                                                             AGGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTT              >  2:1527679/1‑91

                                                                                              GGAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTC             >  2:2382913/1‑91

                                                                                               GAAGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCT            <  1:3153467/91‑1

                                                                                                 AGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTA          >  2:829342/1‑91

                                                                                                 AGTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTA          >  2:411913/1‑91

                                                                                                  GTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTAC         >  1:1664775/1‑91

                                                                                                  GTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTAC         >  2:1640788/1‑91

                                                                                                  GTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTAC         >  2:1640817/1‑91

                                                                                                  GTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTAC         <  2:320905/91‑1

                                                                                                  GTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTAC         <  2:2587900/91‑1

                                                                                                  GTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTAC         >  2:1056296/1‑91

                                                                                                  GTTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTAC         >  1:2440397/1‑91

                                                                                                   TTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACA        >  1:3525088/1‑91

                                                                                                   TTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACA        <  1:659621/91‑1

                                                                                                   TTATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACA        <  2:2263221/91‑1

                                                                                                    TATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAA       >  2:138174/1‑91

                                                                                                    TATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAA       <  1:2164267/91‑1

                                                                                                    TATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAA       <  1:2048287/91‑1

                                                                                                    TATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAA       <  1:1844267/91‑1

                                                                                                     ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG      <  1:93751/91‑1

                                                                                                     ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG      >  2:2346736/1‑91

                                                                                                     ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG      <  1:3571723/91‑1

                                                                                                     ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG      <  1:339177/91‑1

                                                                                                     ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG      <  2:3289039/91‑1

                                                                                                     ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG      <  2:168002/91‑1

                                                                                                     ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG      <  2:3155135/91‑1

                                                                                                     ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG      >  2:3061283/1‑91

                                                                                                     ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG      >  1:3281519/1‑91

                                                                                                     ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG      <  2:2439884/91‑1

                                                                                                     ATGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAG      <  1:3010317/91‑1

                                                                                                      TGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGT     <  2:2494973/91‑1

                                                                                                      TGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGT     <  1:2542763/91‑1

                                                                                                      TGATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGT     <  1:3951816/91‑1

                                                                                                       GATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTG    <  1:2766288/91‑1

                                                                                                       GATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTG    <  2:1952843/91‑1

                                                                                                        ATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGT   <  1:1104659/91‑1

                                                                                                        ATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGT   <  2:366347/91‑1

                                                                                                        ATAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGT   <  2:365714/91‑1

                                                                                                         TAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGTT  <  2:1300052/91‑1

TTCTAGCTTCATCAGTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/2442716‑2442821

‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggaagttatgatAGGCTCAAGGCCATTAAATCATAACTTCCTTTTTTCTAATTTGAAATATCATTATGTAGTAAATACTCATTATATTTTCTTACAAGTGTT  <  USA300TCH1516_ALE/2442838‑2442749

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.