| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2442821 | 122 (0.600) | 33 (0.200) | 12/128 | NT | 24.1% | intergenic (+18/+40) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2442838 | 111 (0.680) | intergenic (+35/+23) | glvR/USA300HOU_RS12585 | HTH‑type transcriptional regulator GlvR/hypothetical protein | |||||
Only 100 of 364 total aligned reads displayed.
GTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAA > USA300TCH1516_ALE/2442730‑2442911 | ttATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAT > 1:2685744‑M1/1‑91 (MQ=255) tATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGAtt > 1:1600006/1‑91 (MQ=255) atatatTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAAt > 1:689018/1‑91 (MQ=255) tatTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATgcc > 2:686887/1‑89 (MQ=255) ggtttcgaattgatgtttgataagatgtaccacgttatcgaaacatcaacacaacaataaaatgatAAAAGGAAGTTATGATTTAATGGcc > 1:3702537‑M1/67‑91 (MQ=255) attattTAAAACACTTGTAAAAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGcc < 2:3908258/91‑1 (MQ=255) ttCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCt < 1:109137/91‑1 (MQ=255) ttCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCt < 1:1949982/91‑1 (MQ=255) ttCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCt > 2:1086060/1‑91 (MQ=255) tCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCtt < 1:2271550/91‑1 (MQ=255) cTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTg > 1:2412792/1‑91 (MQ=255) tGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGc < 1:1086673/91‑1 (MQ=255) gAAGCACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATaggctcaaggccatta < 1:3118901‑M1/91‑17 (MQ=255) gAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGcc > 2:1936289/1‑91 (MQ=255) gAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGcc < 2:2737952/91‑1 (MQ=255) acacTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATaggctcaaggccattaaat < 1:827988‑M1/91‑20 (MQ=255) acacTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATaggctcaaggccattaaat < 1:1471178‑M1/91‑20 (MQ=255) acacTTGTAAGAAAATATAATGAGTATTTACTACAGAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATaggctcaaggccattaaat < 2:2690445‑M1/91‑20 (MQ=255) acTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATaggctcaaggccattaaatca < 2:477480‑M1/91‑22 (MQ=255) acTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatca < 2:2494973‑M2/91‑5 (MQ=255) cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATaggctcaaggccattaaatcat < 1:2583882‑M1/91‑23 (MQ=255) cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATaggctcaaggccattaaatcat < 1:1403149‑M1/91‑23 (MQ=255) cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATaggctcaaggccattaaatcat < 1:1533275‑M1/91‑23 (MQ=255) cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATaggctcaaggccattaaatcat < 1:1711498‑M1/91‑23 (MQ=255) cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcat < 1:339177‑M2/91‑6 (MQ=255) cTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcat < 1:3571723‑M2/91‑6 (MQ=255) gtttgataagatgtaccacgttatcgaaacaacaacacaacaattaaatgatATAAGCAAGTTATGACTTAATGGCCTTGAGCCTATCATa > 1:3159439‑M1/53‑91 (MQ=255) tGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATaggctcaaggccattaaatcataa < 1:3030454‑M1/91‑25 (MQ=255) tAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATaggctcaaggccattaaatcataact < 1:1182838‑M1/91‑27 (MQ=255) tAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataact < 2:1827145‑M2/91‑10 (MQ=255) tAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataact > 2:411913‑M2/1‑82 (MQ=255) aaGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATaggctcaaggccattaaatcataactt < 1:1749198‑M1/91‑28 (MQ=255) aatatatAATGAGTATCTAAGACATAATTATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGTCTTGAGCCTATCATAACTTCCt < 2:1527848/88‑1 (MQ=255) aaaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttcctt > 2:3451029‑M2/1‑77 (MQ=255) aaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttccttt > 2:1703983‑M2/1‑76 (MQ=255) aaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttccttt < 2:2471125‑M2/91‑16 (MQ=255) aaTATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttccttt > 1:3840227‑M2/1‑76 (MQ=255) taccacgttatcgaaacatcaacacaacaataaaatgaaAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATc > 1:999360‑M1/40‑91 (MQ=255) taATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATc < 2:1929248/91‑1 (MQ=255) aaTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTACTGGCCTTGAGCCTATCATAACTTCCTTTTATCa > 1:3241232/1‑91 (MQ=255) aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt > 2:3123793/1‑91 (MQ=255) aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAt > 2:1171609/1‑91 (MQ=255) aTGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCATTGAGAATatcataacttccttttttata < 2:1397882‑M2/91‑22 (MQ=255) gcgaTTTACTACATAATGATATCACAAATTAGAAAAAAGGAAGTTATGATTTACTGGCGTTGAGTATATCATAACTTCCTTTTATCAtttt < 2:3340626/88‑1 (MQ=255) aGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAtttt < 2:2596691/91‑1 (MQ=255) aGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCAtttt < 1:3439877/91‑1 (MQ=255) gTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTa > 1:1919402/1‑91 (MQ=255) ttatactacATAATGATATATCAAATGAGAAAAAAGGAAGTTATGATTTCATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAtt < 2:2312446/88‑1 (MQ=255) tttACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTAttg < 1:2701970/91‑1 (MQ=255) tactacATAATGATATTTCAAATTAGAAAAAAGTAAGTTATGACTTAATGGCCTTGAGCCTatcataacatcctattttccaatttgaaat < 2:3278890‑M2/91‑31 (MQ=255) tacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATGACTTCCTTTTATCATTTTATtgttgtg < 2:3477131/91‑1 (MQ=255) tacATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtg < 2:2184354/91‑1 (MQ=255) aTAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATtgttgtgttg < 2:2088047/91‑1 (MQ=255) tAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGa < 2:3581128/91‑1 (MQ=255) atTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCg < 1:2451538/91‑1 (MQ=255) aaTTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACg > 2:843708/1‑91 (MQ=255) tAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTgg > 1:495738/1‑91 (MQ=255) aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt < 2:939693/91‑1 (MQ=255) aGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGt < 1:455089/91‑1 (MQ=255) gAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTa < 1:2503405/91‑1 (MQ=255) aaaaaGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACa < 2:3834969/91‑1 (MQ=255) aaaaGGTAGTTATGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatat < 2:3473606‑M1/91‑76 (MQ=255) AAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACAt < 2:3716826‑M1/91‑1 (MQ=255) aaaGGAAGTTATGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatatt > 1:3840211‑M1/1‑15 (MQ=255) aaaGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatatt < 1:3543554‑M2/91‑60 (MQ=255) aaaGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatatt < 2:1511623‑M2/91‑60 (MQ=255) aaGGAAGTTATGATTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattt < 2:3466476‑M2/91‑61 (MQ=255) AAGGAAGTTATGATTTAATGGCCTTGAGCTTATCATAACTTCCTTTTATCATTTTATTGTTGTGGTGATGTTTCGATAACGTGGTACATCt > 2:2245461‑M1/1‑91 (MQ=255) AAGGAAGTTATGATTTAATGGCCTTGAGCCCATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCt < 1:2952446‑M1/91‑1 (MQ=255) ggAAGTTATGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttc > 2:2382913‑M1/1‑12 (MQ=255) GGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTa > 1:952089‑M1/1‑91 (MQ=255) gAAGTTATGATTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttat < 2:3613389‑M2/91‑64 (MQ=255) aGTTATGATTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttctta < 2:1235201‑M2/91‑66 (MQ=255) gTTATGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttac < 2:601862‑M1/91‑84 (MQ=255) gTTATGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttac < 2:320905‑M1/91‑84 (MQ=255) gTTATGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttac > 2:1640788‑M1/1‑8 (MQ=255) ttATGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttaca < 1:659621‑M1/91‑85 (MQ=255) ttATGATTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttaca < 1:3464873‑M2/91‑68 (MQ=255) tATGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaa > 2:138174‑M1/1‑6 (MQ=255) tATGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaa > 2:2087589‑M1/1‑6 (MQ=255) tATGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaa < 1:2164267‑M1/91‑86 (MQ=255) tATGATTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaa < 1:1295694‑M2/91‑69 (MQ=255) aTGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaag < 2:168002‑M1/91‑87 (MQ=255) aTGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaag > 1:3281519‑M1/1‑5 (MQ=255) aTGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaag < 2:3179104‑M1/91‑87 (MQ=255) aTGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaag > 2:3061283‑M1/1‑5 (MQ=255) aTGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaag < 2:3289039‑M1/91‑87 (MQ=255) aTGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaag > 2:2346736‑M1/1‑5 (MQ=255) aTGATTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaag < 1:1728497‑M2/91‑70 (MQ=255) tGATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaagt < 1:3951816‑M1/91‑88 (MQ=255) tGATTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtcgtaaatactcattatattttcttacaagt < 2:784811‑M2/91‑71 (MQ=255) gATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaagtg < 1:2766288‑M1/91‑89 (MQ=255) gATaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaagtg < 2:1952843‑M1/91‑89 (MQ=255) GATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATc > 1:2337985‑M1/1‑91 (MQ=255) aTaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaagtgt < 2:365714‑M1/91‑90 (MQ=255) aTaggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaagtgt < 2:366347‑M1/91‑90 (MQ=255) aTTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaagtgt < 2:2434548‑M2/91‑73 (MQ=255) aTTTAATGGCCTTGAGCCTatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaagtgt < 2:3238168‑M2/91‑73 (MQ=255) taggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaagtgtt < 2:1300052‑M1/91‑91 (MQ=255) taggctcaaggccattaaatcataacttccttttttctaatttgaaatatcattatgtagtaaatactcattatattttcttacaagtgtt < 1:3584445‑M1/91‑91 (MQ=255) | GTTATCATATATTCTTTGAAACACTTGTAAGAAAATATAATGAGTATTTACTACATAATGATATTTCAAATTAGAAAAAAGGAAGTTATGATTTAATGGCCTTGAGCCTATCATAACTTCCTTTTATCATTTTATTGTTGTGTTGATGTTTCGATAACGTGGTACATCTTATCAAACATCAA > USA300TCH1516_ALE/2442730‑2442911 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |