| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2444885 | 165 (0.810) | 20 (0.110) | 10/140 | NT | 11.4% | intergenic (‑38/+187) | mleN_2/USA300HOU_RS12595 | Malate‑2H(+)/Na(+)‑lactate antiporter/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2444897 | 167 (0.940) | intergenic (‑50/+175) | mleN_2/USA300HOU_RS12595 | Malate‑2H(+)/Na(+)‑lactate antiporter/hypothetical protein | |||||
AACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2444786‑2444885‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctctttctTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTATTCC < USA300TCH1516_ALE/2444897‑2444808 AACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATA < 2:1235242/91‑1AACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATA < 1:13180/91‑1AACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATA < 1:183875/91‑1AACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCAGTGCTCTTTATATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATA < 2:2542510/91‑1 ACGCCACTAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATAC < 2:2426358/91‑1 ACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATAC > 1:2688408/1‑91 ACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATAC < 1:2518646/91‑1 ACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATAC > 2:2128769/1‑91 ACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATAC > 2:2904781/1‑91 ACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCAAATTAAAAATAC > 2:2132695/1‑91 CGCCACTAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAAGACC < 2:2712575/91‑1 CGCCACAACTAATACCAAGGTGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTGATACCTGCTTGCCAATTACAAATACC < 2:2712322/91‑1 CGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACC > 2:847604/1‑91 CGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACC > 1:2893229/1‑91 CGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACC < 1:131804/91‑1 CCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTC > 2:2760100/1‑91 CCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTC > 1:1620886/1‑91 CCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTC < 2:3230165/91‑1 CCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTC > 1:3212505/1‑91 CCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTC < 2:2661589/91‑1 ACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTT < 2:1904672/91‑1 ACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTT > 1:3923743/1‑91 ACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTT > 1:3936794/1‑91 CAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTT < 2:3795251/91‑1 AAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCGTCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTC < 2:2004954/91‑1 AAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTC < 2:2004715/91‑1 AAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTC < 2:2005002/91‑1 AATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCT < 2:639146/91‑1 AATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCT > 1:3522395/1‑91 AATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTAAAAAAAAAAAAATACCTCTTTCT < 2:639024/91‑1 AATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTCTTACCTGCTTTCCAATTAAAAATACCTCTTTCT > 2:363994/1‑91 AAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTT < 1:377558/91‑1 GGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGT < 1:1135313/91‑1 GGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGT < 2:1052064/91‑1 GGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGT < 1:515674/91‑1 GGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGT < 1:1372222/91‑1 GGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGT < 1:3479399/91‑1 GGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGT < 1:1633998/91‑1 GGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGTG < 1:3953380/91‑1 GGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGTG < 1:885204/91‑1 GGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGTGA < 2:2934012/91‑1 AATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGTGAGAAAG < 1:1033814/91‑1 AATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGTGAGAAAG < 1:344152/91‑1 AATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGTGAGAAAG < 1:3037766/91‑1 ATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGTGAGAAAGA < 1:1244628/91‑1 TGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGTGAGAAAGAG < 2:432538/91‑1 GCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGTGAGAAAGAGG < 2:2223278/91‑1 GCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGTGAGAAAGAGG < 2:2588914/91‑1 GCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGTGAGAAAGAGG < 1:1738856/91‑1 GCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCTTCATCGTTTGTGAGAAAGAGGTATTTT < 2:426933/91‑1 AATTAAAAATACCTCTTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGC > 1:130687/1‑91 ACCTCTTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGG > 2:297415/1‑91 CCTCTTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGC > 2:3832681/1‑91 CTCTTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCA < 1:2836635/91‑1 CTCTTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCA < 1:3703311/91‑1 TCTTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCAT < 2:2003691/91‑1 TCTTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCAT > 2:613980/1‑91 CTTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATT < 1:1825341/91‑1 CTTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATT < 1:3480423/91‑1 CTTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATT > 1:1884350/1‑91 CTTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATT < 1:2519565/91‑1 TTTCTTCATCGTTTGTGAGCAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTA > 2:3405030/1‑91 TTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTTCTTCTTAATCAGGTAAAAAGCATGGAAGTACATACAAAGAGCAATGCTTGGGCATTA > 2:605417/1‑91 TTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTA > 1:183723/1‑91 TTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTA > 1:183724/1‑91 TTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTA > 1:1607546/1‑91 TTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTA > 1:2624905/1‑91 TTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTA > 1:1340978/1‑91 TTTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTA > 1:2624752/1‑91 TTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTAT > 2:1956480/1‑91 TTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTAT < 1:490912/91‑1 TTCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTAT > 1:1178415/1‑91 TCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTATT > 2:2615913/1‑91 TCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTATT < 1:2144822/91‑1 TCTTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTATT > 1:3864661/1‑91 CTTCATCGTTTATGAGAAAGAGGTATTTTTAATTGAAAAAAAAAAAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTATTC < 2:63810/91‑1 TTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTATTCC < 2:3091452/91‑1 TTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTATTCC < 1:2321645/91‑1 TTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTATTCC < 1:2491734/91‑1 AACGCCACAAATAATAACAAGGGGAATAATGCCCAAGCATTGCTCTTTTTATGTACTTCCATCCTTTTTACCTGCTTTCCAATTAAAAATACCTCTTTCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2444786‑2444885‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑acctctttctTCATCGTTTGTGAGAAAGAGGTATTTTTAATTGGAAAGCAGGTAAAAAGGATGGAAGTACATAAAAAGAGCAATGCTTGGGCATTATTCC < USA300TCH1516_ALE/2444897‑2444808 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |