| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2478424 | 7 (0.030) | 6 (0.030) | 4/146 | NT | 48.5% | intergenic (+311/‑264) | USA300HOU_RS12760/USA300HOU_RS12765 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2478463 | NA (NA) | intergenic (+350/‑225) | USA300HOU_RS12760/USA300HOU_RS12765 | hypothetical protein/hypothetical protein | |||||
GCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2478328‑2478424‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccaacACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC < USA300TCH1516_ALE/2478463‑2478374 GCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCAC > 1:3548670/1‑91GCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCAC > 1:3014964/1‑91 CTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGACTTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCCCC > 2:1383791/1‑91 CTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACC < 1:3927724/91‑1 CTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACC < 1:337082/91‑1 TTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCC < 1:1170636/91‑1 TTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCC < 1:1232461/91‑1 TTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCC > 1:2932531/1‑91 CGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCA > 2:1038496/1‑91 CGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCA > 1:2321792/1‑91 GCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAA > 1:1897187/1‑91 GCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAA > 2:672802/1‑91 GCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAA > 1:3022497/1‑91 CTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAAC < 2:948316/91‑1 TAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCC < 2:2920962/91‑1 TAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCC < 2:2921059/91‑1 AGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCCAGAAGCTGACATACAGTCAGCTTACAACAATGTGCCG < 1:3909268/91‑1 AGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCG < 1:528464/91‑1 GAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGG < 1:3456856/91‑1 ATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTT < 2:493084/91‑1 CCCCAACACAGACGCTGACATATAGTCAGCTTAGAACAAAGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGACATCAA < 1:3242689/91‑1 CCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAA < 2:3139404/91‑1 CCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAA > 2:2544448/1‑91 CCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAA > 2:2544132/1‑91 CCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAA < 1:848984/91‑1 CCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAA < 1:896405/91‑1 CCCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAA > 2:2544056/1‑91 CCCAACACAGGAGCTGACAGATAGGCAGCTTAGAACAATGTGCCGGGGGGGGGGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAA < 2:3325890/91‑1 CCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAA > 1:2368915/1‑91 CCCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAA > 2:2253164/1‑91 CCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAA > 2:2925666/1‑91 CCAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAA > 1:2030135/1‑91 ggACACGGGAGCGGACATATGGTCAGCTTACAACAATGTGCCGGTTGGGGGGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAA < 2:3279109/89‑1 CAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAca > 2:1243950/1‑89 CAACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAA > 2:1109846/1‑91 AACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAAT < 1:1096007/91‑1 AACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAAT > 2:1176324/1‑91 AACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAAT < 1:3448755/91‑1 AACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAAT < 1:3767247/91‑1 AACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAAT < 1:418785/91‑1 AACACAGAAGCTGACATATAGTCAGCATACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAAT > 2:2241488/1‑91 ACACCGAAGCTGACGTATGGTCAGCTTACAACAATGGGCCGGTTGGGGTGGCTGAGACGGCGCCCTAGGAAGGGACCCGTCATCAAAAATT < 2:3244854/91‑1 ACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATT < 1:2176145/91‑1 ACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATT > 2:3173476/1‑91 ACACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATT < 1:3168356/91‑1 ACACAGAAGCTGACATATAGTCAGCGTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATT < 2:3612859/91‑1 ACACAGAAGCGGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATT < 2:3612858/91‑1 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 1:78856/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 1:3739581/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 1:2643080/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 2:2126501/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 1:2911894/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 1:1907648/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCAGCAAAAATTC > 1:3780012/1‑91 CACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTCGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC > 2:1900747/1‑91 GCTTCGCTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2478328‑2478424‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccccaacACAGAAGCTGACATATAGTCAGCTTACAACAATGTGCCGGTTGGGGTGGCTGAGACGGCACCCTAGGAAGGGACCCGTCATCAAAAATTC < USA300TCH1516_ALE/2478463‑2478374 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |