| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2478424 | 7 (0.030) | 6 (0.030) | 4/146 | NT | 48.5% | intergenic (+311/‑264) | USA300HOU_RS12760/USA300HOU_RS12765 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2478463 | NA (NA) | intergenic (+350/‑225) | USA300HOU_RS12760/USA300HOU_RS12765 | hypothetical protein/hypothetical protein | |||||
CTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT > USA300TCH1516_ALE/2478334‑2478514 | cTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAAC < 2:948316‑M1/91‑1 (MQ=255) tGCCCATCTGGCGCATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCgg < 1:2590570/91‑1 (MQ=255) tGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCgg < 1:1600286/91‑1 (MQ=39) tGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCgg < 1:1600492/91‑1 (MQ=39) tGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCgg > 1:1693025/1‑91 (MQ=39) tGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCgg < 2:485706/91‑1 (MQ=38) tGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCgg > 1:2152776/1‑91 (MQ=39) tGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCgg < 1:2703502/91‑1 (MQ=39) tGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCgg < 1:2591303/91‑1 (MQ=39) tGCCCATCCGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCgg > 1:951172/1‑91 (MQ=255) gCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTTCCGTCTCAGCCACCCCAACCGGc > 1:836305/1‑91 (MQ=255) gCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGc < 1:1003651/91‑1 (MQ=39) gCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGc > 2:1219412/1‑91 (MQ=38) gCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGc > 1:1679567/1‑91 (MQ=39) cATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGcaca > 2:708855/1‑91 (MQ=37) cATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGcaca > 1:278154/1‑91 (MQ=37) aTCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACAt > 1:3811689/1‑91 (MQ=35) tCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTATGGTGCCGTCTCAGCCACCCCAACCGGCACAtt > 1:3169346/1‑91 (MQ=21) ggCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACAttgtt < 1:1908059/91‑1 (MQ=32) gCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTCGGGCACCGTCTCAGCCCCCCCACCCGCCACAttgttg > 2:1888982/1‑91 (MQ=11) gCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACAttgttg > 1:765291/1‑91 (MQ=31) tAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACacagaagctgacatatagtcagcttacaacaatgtgcc < 2:2920962‑M1/91‑39 (MQ=255) tAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACacagaagctgacatatagtcagcttacaacaatgtgcc < 2:2921059‑M1/91‑39 (MQ=255) aGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACccagaagctgacatacagtcagcttacaacaatgtgccg < 1:3909268‑M1/91‑40 (MQ=255) aGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACacagaagctgacatatagtcagcttacaacaatgtgccg < 1:528464‑M1/91‑40 (MQ=255) gAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACacagaagctgacatatagtcagcttacaacaatgtgccgg < 1:3456856‑M1/91‑41 (MQ=255) aTTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACacagaagctgacatatagtcagcttacaacaatgtgccggtt < 2:493084‑M1/91‑43 (MQ=255) ccccAACacagacgctgacatatagtcagcttagaacaaagtgccggttggggtggctgagacggcaccctaggaagggacccgacatcaa < 1:3242689‑M1/91‑85 (MQ=255) ccccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaa > 2:2544132‑M1/1‑7 (MQ=255) ccccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaa < 1:848984‑M1/91‑85 (MQ=255) ccccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaa < 1:896405‑M1/91‑85 (MQ=255) ccccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaa > 2:2544448‑M1/1‑7 (MQ=255) ccccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaa < 2:3139404‑M1/91‑85 (MQ=255) ccccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaa > 2:2544056‑M1/1‑7 (MQ=255) cccAACacaggagctgacagataggcagcttagaacaatgtgccgggggggggggctgagacggcaccctaggaagggacccgtcatcaaa < 2:3325890‑M1/91‑86 (MQ=255) cccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaa > 2:2253164‑M1/1‑6 (MQ=255) cccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaa > 1:2368915‑M1/1‑6 (MQ=255) ccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaa > 2:2925666‑M1/1‑5 (MQ=255) ccAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaa > 1:2030135‑M1/1‑5 (MQ=255) ggacacgggagcggacatatggtcagcttacaacaatgtgccggttgggggggctgagacggcaccctaggaagggacccgtcatcaaaaa < 2:3279109‑M1/89‑88 (MQ=255) cAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaca > 2:1243950‑M1/1‑4 (MQ=255) cAACacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaa > 2:1109846‑M1/1‑4 (MQ=255) aaCacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaat < 1:1096007‑M1/91‑89 (MQ=255) aaCacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaat > 2:1176324‑M1/1‑3 (MQ=255) aaCacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaat < 1:418785‑M1/91‑89 (MQ=255) aaCacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaat < 1:3767247‑M1/91‑89 (MQ=255) aaCacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaat < 1:3448755‑M1/91‑89 (MQ=255) aaCacagaagctgacatatagtcagcatacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaat > 2:2241488‑M1/1‑3 (MQ=255) acaccgaagctgacgtatggtcagcttacaacaatgggccggttggggtggctgagacggcgccctaggaagggacccgtcatcaaaaatt < 2:3244854‑M1/91‑90 (MQ=255) acacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaatt < 1:2176145‑M1/91‑90 (MQ=255) acacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaatt > 2:3173476‑M1/1‑2 (MQ=255) acacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaatt < 1:3168356‑M1/91‑90 (MQ=255) acacagaagctgacatatagtcagcgtacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaatt < 2:3612859‑M1/91‑90 (MQ=255) acacagaagcggacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaatt < 2:3612858‑M1/91‑90 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaattc > 1:1907648‑M1/1‑1 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaattc > 1:2643080‑M1/1‑1 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaattc > 1:2911894‑M1/1‑1 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaattc > 1:3739581‑M1/1‑1 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaattc > 1:78856‑M1/1‑1 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcatcaaaaattc > 2:2126501‑M1/1‑1 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggttggggtggctgagacggcaccctaggaagggacccgtcagcaaaaattc > 1:3780012‑M1/1‑1 (MQ=255) cacagaagctgacatatagtcagcttacaacaatgtgccggtcggggtggctgagacggcaccctaggaagggacccgtcatcaaaaattc > 2:1900747‑M1/1‑1 (MQ=255) | CTATGCCCATCTGGCACATTACTGTAAAATTCTATAAATAGAATTTTTGATGACGGGTCCCTTCCTAGGGTGCCGTCTCAGCCACCCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT > USA300TCH1516_ALE/2478334‑2478514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |