| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2651125 | 182 (0.890) | 10 (0.050) | 8/146 | NT | 5.5% | intergenic (+68/‑305) | USA300HOU_RS13635/fbp | hypothetical protein/Fructose‑1,6‑bisphosphatase class 3 |
| ? | USA300TCH1516_ALE | = 2651145 | 176 (0.950) | intergenic (+88/‑285) | USA300HOU_RS13635/fbp | hypothetical protein/Fructose‑1,6‑bisphosphatase class 3 | |||||
TATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2651029‑2651125‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatcccCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACT < USA300TCH1516_ALE/2651145‑2651056 TATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCA < 2:2532325/91‑1 ATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA > 2:3175884/1‑91 ATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA < 1:2575724/91‑1 ATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA > 2:3492271/1‑91 ATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAA > 1:2383002/1‑91 TTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAA < 1:3643497/91‑1 TTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAA > 2:2939043/1‑91 TTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAA < 1:2993386/91‑1 TTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAA < 1:2993269/91‑1 TTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAA < 2:2812509/91‑1 TTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACTCACATATTCCATCGTAATTCAAAATCATTTTCAAAg > 2:3912423/1‑90 TTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAAT > 1:2661556/1‑91 TATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATC < 1:3909754/91‑1 TATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATC < 1:494721/91‑1 TATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATC > 1:520573/1‑91 TTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC > 1:3697286/1‑91 TTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC > 1:3697287/1‑91 TTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC > 2:3186190/1‑91 TTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC > 2:3187241/1‑91 TCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCAATTTCCAATCCtctg > 2:1069617/1‑87 ATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCATTATTTGG < 1:147389/91‑1 TTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTG < 1:907777/91‑1 TTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCTCCATTTTTTGGGTGA < 2:2456790/91‑1 TAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAA < 2:3936438/91‑1 AGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAG < 2:659364/91‑1 AGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAG < 2:659382/91‑1 ACTTAAAGTATTAAATGTCTAAGTACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGGAT < 2:1132398/91‑1 CTTAAAGTATTAAATGTCTAAATACACACATAGTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGGATT < 2:973082/91‑1 TAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGGATTTG < 2:941226/91‑1 TAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCCGCACCATTATTTGGGTGAAGGGATTTG < 1:1857928/91‑1 AATCCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAG > 1:3531822/1‑91 ATCCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGT < 1:3817971/91‑1 ATCCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGT < 1:3218985/91‑1 CCCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTA > 2:1033234/1‑91 CCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTAC < 1:146989/91‑1 CCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTAC < 1:610626/91‑1 CCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTAC > 1:1852150/1‑91 CCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTAC > 1:1852151/1‑91 CCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTAC > 1:1891216/1‑91 CCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTAC > 2:3365631/1‑91 CCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTAC > 1:2416414/1‑91 CCCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTAC > 1:3651567/1‑91 CCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACT > 1:208042/1‑91 CCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACT > 1:2322865/1‑91 CCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACT < 1:3912008/91‑1 CCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACT < 1:533958/91‑1 CCGCACCATTATTTGGGTGAAGGGACTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACT < 1:3688544/91‑1 TATTTATTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2651029‑2651125‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaatcccCGCACCATTATTTGGGTGAAGGGATTTGAAAATGATTTTGAATTACGATGGAATATGTGTGTATTTAGACATTTAATACTTTAAGTTACT < USA300TCH1516_ALE/2651145‑2651056 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |