New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2651125182 (0.890)10 (0.050) 8/146 NT 5.5% intergenic (+68/‑305) USA300HOU_RS13635/fbp hypothetical protein/Fructose‑1,6‑bisphosphatase class 3
?USA300TCH1516_ALE = 2651145 176 (0.950)intergenic (+88/‑285) USA300HOU_RS13635/fbp hypothetical protein/Fructose‑1,6‑bisphosphatase class 3

Only 100 of 281 total aligned reads displayed.

TTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAAT  >  USA300TCH1516_ALE/2651035‑2651215
                                                                                          |                                                                                          
ttttCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC                                                                                            >  1:3697286‑M1/1‑91 (MQ=255)
ttttCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCC                                                                                            >  2:3187241‑M1/1‑91 (MQ=255)
atgagaggagggatttgttatattcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATccc                                                                                            <  2:3767871‑M1/7‑1 (MQ=255)
    cAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCa                                                                                        >  1:2277940/1‑91 (MQ=255)
    cAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCa                                                                                        <  2:3322233/91‑1 (MQ=255)
     aagaagAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCAc                                                                                       <  2:931599/91‑1 (MQ=255)
     aagaagAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCAc                                                                                       <  2:574224/91‑1 (MQ=255)
      agaagaAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCAcc                                                                                      <  1:2995651/91‑1 (MQ=255)
      agaagaAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCAcc                                                                                      >  1:573569/1‑91 (MQ=255)
       gaagaaAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCAccc                                                                                     >  2:2956698/1‑91 (MQ=255)
        aagaaAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCa                                                                                    >  1:1678548/1‑91 (MQ=255)
          gaaAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCaaa                                                                                  <  1:2171320/91‑1 (MQ=255)
           aaaaaTATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAaat                                                                                 >  1:321502/1‑91 (MQ=255)
               atatTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCttcaccattatttgg                                                                             <  1:147389‑M1/91‑16 (MQ=255)
                tatTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATCTTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATgg                                                                            <  2:3473327/91‑1 (MQ=255)
                tatTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATgg                                                                            <  2:3062465/91‑1 (MQ=255)
                  tttAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCcgcaccattatttgggtg                                                                          <  1:907777‑M1/91‑19 (MQ=255)
                   ttAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCcgctccattttttgggtga                                                                         <  2:2456790‑M1/91‑20 (MQ=255)
                    tAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCg                                                                        <  2:2289063/91‑1 (MQ=255)
                    tAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCg                                                                        >  1:3861303/1‑91 (MQ=255)
                    tAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCg                                                                        <  1:716783/91‑1 (MQ=255)
                    tAGTAACTTAAAGTATTAAATGTCGAGGTACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTGCCGACAAATAATGGTGCg                                                                        <  2:177562/91‑1 (MQ=255)
                     attcgctaatttcctaaaaaattacgatatgtaaaatgtggaatgtccaaaatttggatgaaaAAATCCCTTCACCCAAATAATAGTGCgg                                                                       >  2:2781358‑M1/64‑91 (MQ=255)
                     attcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccagaatttggatgaaaAAATCCCTTCACCCAAATAATGGTGCgg                                                                       >  1:3429523‑M1/64‑91 (MQ=255)
                     attcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATCCCTTCACCCAAATAATGGTGCgg                                                                       >  1:2553763‑M1/64‑91 (MQ=255)
                     aGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGg                                                                       >  1:2322865‑M2/1‑90 (MQ=255)
                     aGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGg                                                                       >  1:208042‑M2/1‑90 (MQ=255)
                     aGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGg                                                                       <  1:3912008‑M2/91‑2 (MQ=255)
                     aGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGg                                                                       <  1:533958‑M2/91‑2 (MQ=255)
                      ttcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATCCCTTCACCCAATTAATGGTGCggg                                                                      >  1:3043686‑M1/63‑91 (MQ=255)
                      ttcactagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATCCCTTCACCCAAATAATGGTGCggg                                                                      >  2:2163694‑M1/63‑91 (MQ=255)
                      gTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGgg                                                                      >  2:3365631‑M2/1‑89 (MQ=255)
                       tAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGggg                                                                     >  2:1033234‑M2/1‑88 (MQ=255)
                         aCTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGgggat                                                                   <  1:3218985‑M2/91‑6 (MQ=255)
                          ctagtttcctaaaaaattacgatatgtaaaatgtggaatttccaaaatttggatgaaaAAATCCCTTCACCCAAATAATGGTGCGGGGAtt                                                                  >  1:466213‑M1/59‑91 (MQ=255)
                               aGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTc                                                             >  2:1781278/1‑91 (MQ=255)
                                gTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCa                                                            >  2:2507873/1‑91 (MQ=255)
                                  aTTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATc                                                          <  1:355250/91‑1 (MQ=255)
                                  aTTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATc                                                          >  2:3441618/1‑91 (MQ=255)
                                    tAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCa                                                        >  2:1865289/1‑91 (MQ=255)
                                     aaaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCaa                                                       >  2:3961401/1‑91 (MQ=255)
                                     aaaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCaa                                                       >  2:1082728/1‑91 (MQ=255)
                                      aaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCaaa                                                      >  1:3771535/1‑91 (MQ=255)
                                      aaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCaaa                                                      >  1:744095/1‑91 (MQ=255)
                                      aaTGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCaaa                                                      >  2:1387173/1‑91 (MQ=255)
                                        tGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAtt                                                    >  1:3484563/1‑91 (MQ=255)
                                         gTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAttt                                                   <  2:1606480/91‑1 (MQ=255)
                                          tCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAtttt                                                  <  2:2904364/91‑1 (MQ=255)
                                          tCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAAtttt                                                  <  1:102668/91‑1 (MQ=255)
                                              aaTACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGaa                                              >  1:1900604/1‑91 (MQ=255)
                                               aTACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGaaa                                             >  1:668011/1‑91 (MQ=255)
                                                tACACGCATATTCCATCGTAATTCAAGATCATTTTCACAGCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCAGCCAAATTTTGGAAAt                                            <  2:1070332/91‑1 (MQ=255)
                                                  cacacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTc                                          <  2:2987246/91‑1 (MQ=255)
                                                   acacaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTcc                                         <  1:1100372/91‑1 (MQ=255)
                                                     acaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCcac                                       <  1:2737235/91‑1 (MQ=255)
                                                     acaTATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCcac                                       >  2:31324/1‑91 (MQ=255)
                                                       atatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAt                                     >  2:67896/1‑91 (MQ=255)
                                                        tatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAtt                                    <  2:3695403/91‑1 (MQ=255)
                                                        tatTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACAtt                                    <  2:3509885/91‑1 (MQ=255)
                                                           tCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATACTGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTa                                 <  2:2379090/91‑1 (MQ=255)
                                                              aTCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACat                              >  2:841639/1‑91 (MQ=255)
                                                              aTCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACat                              >  1:1231024/1‑91 (MQ=255)
                                                              aTCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACat                              >  1:3303045/1‑91 (MQ=255)
                                                              aTCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACat                              >  2:1927614/1‑91 (MQ=255)
                                                               tCGTAATTCAAAATCCTTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTGATCCAAATTTTGGAAATTCCACATTTTACata                             >  1:3369515/1‑91 (MQ=255)
                                                                cGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACatat                            <  1:2544191/91‑1 (MQ=255)
                                                                cGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACatat                            >  2:2694142/1‑91 (MQ=255)
                                                                cGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACatat                            >  1:3530869/1‑91 (MQ=255)
                                                                  tAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCg                          <  2:2949145/91‑1 (MQ=255)
                                                                   aaTTCAAAATCATTTTCAACTCCCTTCACCCAAATAATGGTGCGGGGCTTTTTTCATCCAACTTTTGGCAATTCCACATTTTACATATCGt                         >  2:491021/1‑91 (MQ=255)
                                                                   aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGt                         <  1:1696741/91‑1 (MQ=255)
                                                                   aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGt                         <  1:3651568/91‑1 (MQ=255)
                                                                   aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGt                         <  2:1678548/91‑1 (MQ=255)
                                                                   aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGt                         <  1:3651905/91‑1 (MQ=255)
                                                                   aaTTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGt                         <  1:820449/91‑1 (MQ=255)
                                                                      tCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGCTTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAt                      >  2:208089/1‑91 (MQ=255)
                                                                         aaaTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAtttt                   >  2:97151/1‑91 (MQ=255)
                                                                          aaTCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAAttttt                  >  2:2599169/1‑91 (MQ=255)
                                                                             cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg               <  2:3915169/91‑1 (MQ=255)
                                                                             cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg               <  1:1621619/91‑1 (MQ=255)
                                                                             cATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTAATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAg               <  1:3640350/91‑1 (MQ=255)
                                                                              aTTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAgg              >  1:3753711/1‑91 (MQ=255)
                                                                               ttttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGa             <  1:1430562/91‑1 (MQ=255)
                                                                                tttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaa            >  1:10/1‑91 (MQ=255)
                                                                                tttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGaa            <  1:1652443/91‑1 (MQ=255)
                                                                                 ttCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAACTTTTTCGGaaa           >  2:19806/1‑91 (MQ=255)
                                                                                  tCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAAc          <  1:919265/91‑1 (MQ=255)
                                                                                   cAAATCCCTTCACCCAAATAATGGTGCGgggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatacttta         <  1:1857928‑M2/91‑64 (MQ=255)
                                                                                    AAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTa        <  1:3882850‑M1/91‑1 (MQ=255)
                                                                                      aTCCCcgcaccattatttgggtgaagggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagt      <  1:3817971‑M1/91‑87 (MQ=255)
                                                                                      aTCCCTTCACCCAAATAATGGTGCGgggatttgaaaatgattttgaattacgatggaatatgtgtgtacttagacatttaatactttaagt      <  2:1132398‑M2/91‑67 (MQ=255)
                                                                                      ATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGt      <  1:636063‑M1/91‑1 (MQ=255)
                                                                                         cccgcaccattatttgggtgaagggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagttac   >  1:2416414‑M1/1‑2 (MQ=255)
                                                                                         cccgcaccattatttgggtgaagggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagttac   >  1:1891216‑M1/1‑2 (MQ=255)
                                                                                         cccgcaccattatttgggtgaagggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagttac   >  1:1852150‑M1/1‑2 (MQ=255)
                                                                                         cccgcaccattatttgggtgaagggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagttac   <  1:610626‑M1/91‑90 (MQ=255)
                                                                                         cccgcaccattatttgggtgaagggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagttac   >  1:1852151‑M1/1‑2 (MQ=255)
                                                                                         CCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGaa   <  1:204664‑M1/91‑1 (MQ=255)
                                                                                          cTTCACCCAAATAATGGTGCGgggatttgaaaatgattttgaattacgatggaatatgtgtgtatttagacatttaatactttaagttact  <  2:659364‑M2/91‑71 (MQ=255)
                                                                                          CTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACTTATCGTAATTTTTTAGGAAACTAGTGAAt  <  1:3179115‑M1/91‑1 (MQ=255)
                                                                                          |                                                                                          
TTTTCAAGAAGAAAAATATTTAGTAACTTAAAGTATTAAATGTCTAAATACACACATATTCCATCGTAATTCAAAATCATTTTCAAATCCCTTCACCCAAATAATGGTGCGGGGATTTTTTCATCCAAATTTTGGAAATTCCACATTTTACATATCGTAATTTTTTAGGAAACTAGTGAAT  >  USA300TCH1516_ALE/2651035‑2651215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.