| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2748981 | 217 (1.070) | 4 (0.020) | 4/150 | NT | 1.9% | coding (185/213 nt) | USA300HOU_RS14150 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 2748996 | 214 (1.120) | coding (170/213 nt) | USA300HOU_RS14150 | hypothetical protein | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AAATAGCCGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2748888‑2748981‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaaaTTGTAAAAAGATCACTTTCTCTGTATGATCAATTAAAATCGTAAAATCAGAAATAAAGTTAGCTAAAATAAAAGGCCGGTGATTTCACAG < USA300TCH1516_ALE/2748996‑2748907 AAATAGCCGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAG > 2:1834373/1‑91 ATAGCCGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAA > 1:863491/1‑91 ATAGCCGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAA < 1:389671/91‑1 TAGCCGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAA < 1:3516495/91‑1 TAGCCGACAACTTCATCTGTGAAATCACCGGCCTTTTACTTTAGCTAACTTTATTTCTGATTTTACGATATTAATTGATCATACAGAGAAA > 1:1678153/1‑91 GAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAATTGTAAAAAGATCACTTTCT < 1:3215923/91‑1 AAATCGCCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAATTGTAAAAAGATCACTTTCTC < 2:3203589/91‑1 ATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAATTGTAAAAAGATCACTTTCTCTG < 1:737876/91‑1 CCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAATTGTAAAAAGATCACTTTCTCTGTATGATCA < 1:2004334/91‑1 AGAAATTGTAAAAAGATCACTTTCTCTGTATGATCAATTAAAATCGTAAAATCAGAAATAAAGTTAGCTAAAATAAAAGGCCGGTGATTTC < 1:3009762/91‑1 AGAAATTGTAAAAAGATCACTTTCTCTGTATGATCAATTAAAATCGTAAAATCAGAAATAAAGTTAGCTAAAATAAAAGGCCGGTGATTTC < 1:3007979/91‑1 AGAAATTGTAAAAAGATCACTTTCTCTGTATGATCAATTAAAATCGTAAAATCAGAAATAAAGTTAGCTAAAATAAAAGGCCGGTGATTTC > 1:1561239/1‑91 AGAAATTGTAAAAAGATCACTTTCTCTGTATGATCAATTAAAATCGTAAAATCAGAAATAAAGTTAGCTAAAATAAAAGGCCGGTGATTTC > 2:2163647/1‑91 AGAAATTGTAAAAAGATCACTTTCTCTGTATGATCAATTAAAATCGTAAAATCAGAAATAAAGTTAGCTAAAATAAAAGGCCGGTGATTTC > 2:3095123/1‑91 GAAATTGTAAAAAGATCACTTTCTCTGTATGATCAATTAAAATCGTAAAATCAGAAATAAAGTTAGCTAAAATAAAAGGCCGGTGATTTCA > 1:3515203/1‑91 GAAATTGTAAAAAGATCACTTTCTCTGTATGATCAATTAAAATCGTAAAATCAGAAATAAAGTTAGCTAAAATAAAAGGCCGGTGATTTCA > 1:2537199/1‑91 GAAATTGTAAAAAGATCACTTTCTCTGTATGATCAATTAAAATCGTAAAATCAGAAATAAAGTTAGCTAAAATAAAAGGCCGGTGATTTCA < 1:424193/91‑1 GAAATTGTAAAAAGATCACTTTCTCTGTATGATCAATTAAAATCGTAAAATCAGAAATAAAGTTAGCTAAAATAAAAGGCCGGTGATTTCA > 2:1476625/1‑91 AAATTGTAAAAAGATCACTTTCTCTGTATGATCAATTAAAATCGTAAAATCAGAAATAAAGTTAGCTAAAATAAAAGGCCGGTGATTTCAC > 2:2659155/1‑91 AATTGTAAAAAGATCACTTTCTCTGTATGATCAATTAAAATCGTAAAATCAGAAATAAAGTTAGCTAAAATAAAAGGCCGGTGATTTCACA > 2:2475693/1‑91 ATTGTAAAAAGATCACTTTCTCTGTATGATCAATTAAAATCGTAAAATCAGAAATAAAGTTAGCTAAAATAAAAGGCCGGTGATTTCACAG > 1:3456880/1‑91 ATTGTAAAAAGATCACTTTCTCTGTATGATCAATTAAAATCGTAAAATCAGAAATAAAGTTAGCTAAAATAAAAGGCCGGTGATTTCACAG > 1:1206925/1‑91 AAATAGCCGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2748888‑2748981‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agaaaTTGTAAAAAGATCACTTTCTCTGTATGATCAATTAAAATCGTAAAATCAGAAATAAAGTTAGCTAAAATAAAAGGCCGGTGATTTCACAG < USA300TCH1516_ALE/2748996‑2748907 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |