New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE = 2748981217 (1.070)4 (0.020) 4/150 NT 1.9% coding (185/213 nt) USA300HOU_RS14150 hypothetical protein
?USA300TCH1516_ALE = 2748996 214 (1.120)coding (170/213 nt) USA300HOU_RS14150 hypothetical protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 291 total aligned reads displayed.

TAGCCGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTGTTAGCTTCTCTTGTT  >  USA300TCH1516_ALE/2748891‑2749071
                                                                                          |                                                                                          
tAGCCGACAACTTCATCTGTGAAATCACCGGCCTTTTACTTTAGCTAACTTTATTTCTGATTTTACGATATTAATTGATCATACAGAGAAA                                                                                            >  1:1678153‑M1/1‑91 (MQ=255)
 aGCCGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAg                                                                                           <  1:2930638/91‑1 (MQ=255)
  gCCGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGt                                                                                          >  1:3715471/1‑91 (MQ=255)
  gCCGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGt                                                                                          >  1:764672/1‑91 (MQ=255)
  gCCGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGt                                                                                          >  1:2107906/1‑91 (MQ=255)
   ccGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGCTTTTAATTGATCATACAGAGTAAGTg                                                                                         >  2:1425148/1‑91 (MQ=255)
   ccGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTg                                                                                         <  1:481012/91‑1 (MQ=255)
   ccGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTg                                                                                         <  1:481363/91‑1 (MQ=255)
   ccGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTg                                                                                         <  1:929551/91‑1 (MQ=255)
   ccGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTg                                                                                         <  1:280189/91‑1 (MQ=255)
    cGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGa                                                                                        <  2:8785/91‑1 (MQ=255)
    cGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGa                                                                                        >  1:899201/1‑91 (MQ=255)
     gACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGAt                                                                                       <  2:554872/91‑1 (MQ=255)
     gACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGAt                                                                                       >  2:515316/1‑91 (MQ=255)
         aCTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCttt                                                                                   <  2:910777/91‑1 (MQ=255)
             cATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTAc                                                                               <  2:2227110/91‑1 (MQ=255)
             cATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTAc                                                                               >  1:3409177/1‑91 (MQ=255)
              aTCTGTGAATTCGCCGGCCTTTTATTTTAGCTAACTTTATTTCTGATGTTACGATTTTCATTGATCATACAGAGAAAGTGATCTTTTTACa                                                                              <  2:2751094/91‑1 (MQ=255)
               tCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACaa                                                                             <  2:3835570/91‑1 (MQ=255)
                   tgAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAAtttc                                                                         >  2:1476625‑M2/1‑87 (MQ=255)
                    gAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAttgtaaaaagatcactttct                                                                        <  1:3215923‑M1/91‑21 (MQ=255)
                    gAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAAtttct                                                                        >  2:3095123‑M2/1‑86 (MQ=255)
                    gAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAAtttct                                                                        <  1:3007979‑M2/91‑6 (MQ=255)
                     aaaTCGCCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAttgtaaaaagatcactttctc                                                                       <  2:3203589‑M1/91‑22 (MQ=255)
                      aaTCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTaa                                                                      >  2:1597508/1‑91 (MQ=255)
                        tCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTaaaa                                                                    <  1:221487/91‑1 (MQ=255)
                            cGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTc                                                                >  2:2679061/1‑91 (MQ=255)
                              gCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCAt                                                              >  2:2013333/1‑91 (MQ=255)
                               ccTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAttgtaaaaagatcactttctctgtatgatca                                                             <  1:2004334‑M1/91‑32 (MQ=255)
                               ccTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATg                                                             <  2:1563111/91‑1 (MQ=255)
                               ccTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATg                                                             >  1:2297739/1‑91 (MQ=255)
                                  tttattttaGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATc                                                          <  1:3115931/91‑1 (MQ=255)
                                  tttattttaGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATc                                                          <  1:1834496/91‑1 (MQ=255)
                                   ttattttaGCTAACTTTATTTCTGATTTTACGATTTTAAGTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCt                                                         <  2:3690005/91‑1 (MQ=255)
                                     attttaGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCtat                                                       >  1:834028/1‑91 (MQ=255)
                                     attttaGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCtat                                                       >  2:1543812/1‑91 (MQ=255)
                                     attttaGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCtat                                                       <  1:106082/91‑1 (MQ=255)
                                       tttaGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTatat                                                     <  2:3284957/91‑1 (MQ=255)
                                       tttaGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTatat                                                     <  2:428337/91‑1 (MQ=255)
                                        ttaGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATAtt                                                    <  2:3434351/91‑1 (MQ=255)
                                        ttaGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATAtt                                                    <  2:3781781/91‑1 (MQ=255)
                                         taGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTg                                                   <  1:1023840/91‑1 (MQ=255)
                                          aGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTgg                                                  <  1:552187/91‑1 (MQ=255)
                                          aGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTgg                                                  >  1:597066/1‑91 (MQ=255)
                                           gCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGa                                                 <  2:3353126/91‑1 (MQ=255)
                                            cTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGAc                                                >  2:2800173/1‑91 (MQ=255)
                                            cTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGAc                                                >  2:2300512/1‑91 (MQ=255)
                                            cTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGAc                                                <  1:15448/91‑1 (MQ=255)
                                              aaCTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACAt                                              >  1:2901127/1‑91 (MQ=255)
                                              aaCTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACAt                                              >  2:1786599/1‑91 (MQ=255)
                                              aaCTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACAt                                              <  1:3197493/91‑1 (MQ=255)
                                               aCTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACAtt                                             >  1:2728504/1‑91 (MQ=255)
                                               aCTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACAtt                                             <  2:1961995/91‑1 (MQ=255)
                                                cTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACAttt                                            <  1:2008908/91‑1 (MQ=255)
                                                 tttATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTtg                                           >  2:121453/1‑91 (MQ=255)
                                                  ttATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTtga                                          <  2:3536045/91‑1 (MQ=255)
                                                   tATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTtgat                                         <  2:2611480/91‑1 (MQ=255)
                                                    aTTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTtgatg                                        >  2:1430251/1‑91 (MQ=255)
                                                    aTTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTtgatg                                        <  2:3588843/91‑1 (MQ=255)
                                                     tttCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTtgatga                                       >  1:3078981/1‑91 (MQ=255)
                                                     tttCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTtgatga                                       >  2:1869162/1‑91 (MQ=255)
                                                        cTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGaaaa                                    >  1:736571/1‑91 (MQ=255)
                                                        cTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGaaaa                                    <  2:3956335/91‑1 (MQ=255)
                                                              ttACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGAc                              >  1:740509/1‑91 (MQ=255)
                                                                aCGATTTTAATTGATCATACAGAGAAAGTGATCTTTATACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACaa                            <  2:3119513/91‑1 (MQ=255)
                                                                 cGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACaaa                           <  1:3613232/91‑1 (MQ=255)
                                                                 cGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACaaa                           >  2:309392/1‑91 (MQ=255)
                                                                   aTTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAAt                         <  1:2468665/91‑1 (MQ=255)
                                                                   aTTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAAt                         <  2:2521762/91‑1 (MQ=255)
                                                                   aTTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAAt                         <  1:1871295/91‑1 (MQ=255)
                                                                    ttttAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATg                        <  2:1627106/91‑1 (MQ=255)
                                                                     tttAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGt                       <  2:3067540/91‑1 (MQ=255)
                                                                        aaTTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGtttt                    >  1:1106790/1‑91 (MQ=255)
                                                                         aTTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTc                   >  1:962781/1‑91 (MQ=255)
                                                                           tGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTg                 >  2:3305624/1‑91 (MQ=255)
                                                                            gATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTGt                <  1:3821726/91‑1 (MQ=255)
                                                                             aTCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTGtt               >  1:1746999/1‑91 (MQ=255)
                                                                               cATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTGTTAg             <  2:2721962/91‑1 (MQ=255)
                                                                                 tACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTGTTAGCt           >  1:2345344/1‑91 (MQ=255)
                                                                                 tACAGAGAAAGTGATCTTTTTACAATTTCGAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAGATGTTTTCTGTTAGCt           <  2:1007092/91‑1 (MQ=255)
                                                                                  aCAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTGTTAGCtt          >  2:2962187/1‑91 (MQ=255)
                                                                                  aCAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTGTTAGCtt          <  1:128791/91‑1 (MQ=255)
                                                                                   cAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTGTTAGCTtc         <  2:2943898/91‑1 (MQ=255)
                                                                                   cAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTGTTAGCTtc         >  2:416717/1‑91 (MQ=255)
                                                                                   cAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTGTTAGCTtc         >  1:2553693/1‑91 (MQ=255)
                                                                                   cAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGACCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTGTTAGCTtc         >  2:3253652/1‑91 (MQ=255)
                                                                                     gagaAAGTGATCTTTTTACATTTTTTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTGTTAGCTtctc       >  2:238610/1‑91 (MQ=255)
                                                                                     gagaAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTGTTAGCTtctc       <  2:1344001/91‑1 (MQ=255)
                                                                                     gagaAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTGTTAGCTtctc       <  1:1450041/91‑1 (MQ=255)
                                                                                     gagaAAGTCATCTTTTTACAATTTCTAAAAACACATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTGTTAGCTtctc       <  1:3616898/91‑1 (MQ=255)
                                                                                      agagagTGAGCTTTTTACAATTTCTAAAAACTCATGGTCTATATTGGACATTTGATGAAGATAAGACAAAATGTTTTCTGTTAGCTTctct      <  2:1272855/91‑1 (MQ=255)
                                                                                      agaAAttgtaaaaagatcactttctctgtatgatcaattaaaatcgtaaaatcagaaataaagttagctaaaataaaaggccggtgatttc      >  2:2163647‑M1/1‑5 (MQ=255)
                                                                                       gaAAttgtaaaaagatcactttctctgtatgatcaattaaaatcgtaaaatcagaaataaagttagctaaaataaaaggccggtgatttca     >  1:3515203‑M1/1‑4 (MQ=255)
                                                                                       gaAAttgtaaaaagatcactttctctgtatgatcaattaaaatcgtaaaatcagaaataaagttagctaaaataaaaggccggtgatttca     <  1:424193‑M1/91‑88 (MQ=255)
                                                                                       gaAAttgtaaaaagatcactttctctgtatgatcaattaaaatcgtaaaatcagaaataaagttagctaaaataaaaggccggtgatttca     >  1:2537199‑M1/1‑4 (MQ=255)
                                                                                         aattgtaaaaagatcactttctctgtatgatcaattaaaatcgtaaaatcagaaataaagttagctaaaataaaaggccggtgatttcaca   >  2:2475693‑M1/1‑2 (MQ=255)
                                                                                          attgtaaaaagatcactttctctgtatgatcaattaaaatcgtaaaatcagaaataaagttagctaaaataaaaggccggtgatttcacag  >  1:3456880‑M1/1‑1 (MQ=255)
                                                                                          attgtaaaaagatcactttctctgtatgatcaattaaaatcgtaaaatcagaaataaagttagctaaaataaaaggccggtgatttcacag  >  1:1206925‑M1/1‑1 (MQ=255)
                                                                                          aGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTGTTAGCTTCTCTTGtt  >  2:1022610/1‑91 (MQ=255)
                                                                                          aGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGCTTTCTGTTAGCTTCTCTTGtt  >  2:3581004/1‑91 (MQ=255)
                                                                                          |                                                                                          
TAGCCGACAACTTCATCTGTGAAATCACCGGCCTTTTATTTTAGCTAACTTTATTTCTGATTTTACGATTTTAATTGATCATACAGAGAAAGTGATCTTTTTACAATTTCTAAAAACTCATGATCTATATTGGACATTTGATGAAAATAAGACAAAATGTTTTCTGTTAGCTTCTCTTGTT  >  USA300TCH1516_ALE/2748891‑2749071

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.