| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2787502 = | 224 (1.100) | 18 (0.100) | 10/142 | NT | 9.5% | intergenic (+48/‑192) | zipA_3/manR_2 | Cell division protein ZipA/Transcriptional regulator ManR |
| ? | USA300TCH1516_ALE | 2787547 = | 146 (0.810) | intergenic (+93/‑147) | zipA_3/manR_2 | Cell division protein ZipA/Transcriptional regulator ManR | |||||
TTAAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2787598‑2787502‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAATAAT > USA300TCH1516_ALE/2787547‑2787636 tgAAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAGGATATTTCAAATAGAAAAATATCTCACT < 2:2809040/89‑1TTAAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACT < 2:1057878/91‑1TTAAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACT < 2:3503960/91‑1TTAAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACT > 1:543057/1‑91TTAAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACT < 2:1511810/91‑1 TAAAGCGAACTTTTATATGATTTTAACAGAGTGCAAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTG < 2:1916023/91‑1 AAAGCGAACTTTTATATGATTTTAACTGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGC < 2:1370793/91‑1 AAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGC > 2:3180432/1‑91 AAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGC > 1:1060240/1‑91 AAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGC < 2:227952/91‑1 AAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGC > 2:3180450/1‑91 AAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGC > 1:2889238/1‑91 AAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGC < 2:428397/91‑1 AAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTAAAAATAGAAAAATATCTCACTGC < 2:227953/91‑1 AGCGATCTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTG < 2:3725732/91‑1 AGCGAACTTTTATATGATTTTAACAGAGTGCGCATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTG > 2:1252267/1‑91 AGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTG > 2:1602280/1‑91 CGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTT > 2:2777735/1‑91 CGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTT < 2:3003543/91‑1 CGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTT < 2:3003847/91‑1 CGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTT < 2:3003912/91‑1 CGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTT < 2:899653/91‑1 CGAACATTTATATGAATTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTT < 2:3003508/91‑1 ATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCCTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAA > 1:2877120/1‑91 AGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTT > 1:846656/1‑91 GAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTC > 1:3616737/1‑91 GAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTC > 1:2723503/1‑91 AACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCG > 1:252727/1‑91 ACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTCAAAATCATATAAAAGTTCGC > 2:56721/1‑91 CAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCT > 2:2878161/1‑91 AGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTT > 2:628746/1‑91 AGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTT > 2:321159/1‑91 AGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTT > 1:2088397/1‑91 AGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTT > 2:1861633/1‑91 AGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAA > 1:1140043/1‑91 GTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTACAATCATATAAAAGTTCGCTTTAAT > 2:786954/1‑91 GTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAAT > 1:2598960/1‑91 GTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAAT > 1:2597539/1‑91 TAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATG > 2:2877591/1‑91 TAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATG > 2:2878302/1‑91 TAAGATATTTCAAATAGAAAAATATCTCACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATG > 2:2878303/1‑91 ACTGCTTTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGT > 2:2367513/1‑91 ACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGT > 1:1474079/1‑91 ACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGT < 1:3492879/91‑1 CTGGTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTT < 1:3068813/91‑1 CTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTT < 2:2004758/91‑1 CTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTT > 2:3206499/1‑91 CTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTT < 1:2415057/91‑1 CTGCTGTTCGTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTT < 1:3785964/91‑1 TGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTT < 2:942793/91‑1 GCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTA < 2:3638971/91‑1 CTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAA > 2:3862380/1‑91 CTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAA > 2:1982861/1‑91 cGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAAT < 2:3920683/90‑1 TGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAAT < 2:422341/91‑1 TGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAAT < 2:29975/91‑1 TGTACTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCACTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAAT < 2:423050/91‑1 TTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAATAA > 1:579664/1‑91 TTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAATAA > 2:3359030/1‑91 TCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAATAAT > 1:2753247/1‑91 TTAAAGCGAACTTTTATATGATTTTAACAGAGTGCGAATTATGCAAATAAAGAACAGCAGTAAGATATTTCAAATAGAAAAATATCTCACTGCTGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2787598‑2787502‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑actgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAATAAT > USA300TCH1516_ALE/2787547‑2787636 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |