BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2787502 =	224 (1.100)	18 (0.100)	10/142	NT	9.5%	intergenic (+48/‑192)	zipA_3/manR_2	Cell division protein ZipA/Transcriptional regulator ManR
*	?	USA300TCH1516_ALE	2787547 =	146 (0.810)	18 (0.100)	10/142	NT	9.5%	intergenic (+93/‑147)	zipA_3/manR_2	Cell division protein ZipA/Transcriptional regulator ManR

Only 100 of 240 total aligned reads displayed.

ATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAATAATA  >  USA300TCH1516_ALE/2787457‑2787637

gaacttttatatgattttaacagagtgcgaattatgcaaataaagAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTc                                                                                            >  1:2723503‑M1/46‑91 (MQ=255)

gaacttttatatgattttaacagagtgcgaattatgcaaataaagAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTc                                                                                            >  1:3616737‑M1/46‑91 (MQ=255)

aTTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTc                                                                                            <  2:3001258/91‑1 (MQ=255)

aTTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTc                                                                                            <  1:3855285/91‑1 (MQ=255)

aTTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTc                                                                                            <  2:813637/91‑1 (MQ=255)

aTTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTc                                                                                            <  2:1466104/91‑1 (MQ=255)

 tttGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATTTTTTTCTATTTGAAATATCTTACTGCTGTTCt                                                                                           >  1:3361917/1‑91 (MQ=255)

  ttGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCtt                                                                                          <  2:424240/91‑1 (MQ=255)

      cTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTAtt                                                                                      >  2:2951310/1‑91 (MQ=255)

      cTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTAtt                                                                                      >  1:1759367/1‑91 (MQ=255)

       tGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTAttt                                                                                     <  2:3833714/91‑1 (MQ=255)

        gATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTg                                                                                    <  2:449672/91‑1 (MQ=255)

        gATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTg                                                                                    >  1:2609821/1‑91 (MQ=255)

         aTACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGc                                                                                   <  2:2501804/91‑1 (MQ=255)

          tACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCa                                                                                  >  1:1854746/1‑91 (MQ=255)

              tCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAAt                                                                              >  1:1417646/1‑91 (MQ=255)

                cacaAGTACCAGATGCATAAATTCAGACAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTc                                                                            <  1:3465811/91‑1 (MQ=255)

                 acaAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCg                                                                           <  1:843589/91‑1 (MQ=255)

                   aaGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCa                                                                         >  1:2409187/1‑91 (MQ=255)

                    aGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTGTTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCAc                                                                        >  1:3946563/1‑91 (MQ=255)

                    aGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCAc                                                                        >  1:2594502/1‑91 (MQ=255)

                    aGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCAc                                                                        <  1:314661/91‑1 (MQ=255)

                     gTACCTGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCAct                                                                       <  2:3643562/91‑1 (MQ=255)

                     gTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCAct                                                                       <  1:3726005/91‑1 (MQ=255)

                      tACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCActc                                                                      <  1:2682256/91‑1 (MQ=255)

                        ccAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTTTTTTATATATCTTACTGCTGTTCTTTATTTGCATAATTCGCActctt                                                                    >  2:921903/1‑90 (MQ=255)

                         cAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGt                                                                   <  2:768446/91‑1 (MQ=255)

                          aGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGtt                                                                  >  1:2831573/1‑91 (MQ=255)

                          aGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGtt                                                                  <  1:1561992/91‑1 (MQ=255)

                          aGATGCATAAATTCAGAAAAACAGCAGTGAGATATTCTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTAGCACTCTGtt                                                                  >  2:3494381/1‑91 (MQ=255)

                            aTGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTaa                                                                >  1:2773575/1‑91 (MQ=255)

                              gCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTaaaa                                                              >  2:853984/1‑91 (MQ=255)

                               cATCAATTCTGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAAt                                                             <  1:3555768/91‑1 (MQ=255)

                               cATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATCTCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAACAt                                                             >  2:1730433/1‑91 (MQ=255)

                               cATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAAt                                                             <  1:1676953/91‑1 (MQ=255)

                               cATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAAt                                                             <  2:2060279/91‑1 (MQ=255)

                               cATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAAt                                                             <  1:1292353/91‑1 (MQ=255)

                                 tAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCa                                                           >  2:2162243/1‑91 (MQ=255)

                                 tAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCa                                                           <  1:1978225/91‑1 (MQ=255)

                                  aaaTTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCat                                                          >  2:2928143/1‑91 (MQ=255)

                                   aaTTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCata                                                         <  2:1429113/91‑1 (MQ=255)

                                    aTTCAGAACAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCCTTCTTTGCATAATTCGCACTCTGTTAAAATCatat                                                        >  2:82881/1‑91 (MQ=255)

                                     ttCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCAtata                                                       <  1:1451086/91‑1 (MQ=255)

                                       ataaagaacagcagtaagatatttcaaatagaaaaatatctcactgctgttCCTTATTTGCATAATTCGCACTCTGTTAAAATCATATaaa                                                     >  1:2877120‑M2/52‑91 (MQ=255)

                                        aGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATaaaa                                                    <  2:98004/91‑1 (MQ=255)

                                         gAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAg                                                   <  2:1991015/91‑1 (MQ=255)

                                           agaacagcagtaagatatttcaaatagaaaaatatctcactgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGtt                                                 >  1:846656‑M2/48‑91 (MQ=255)

                                           aaaaCAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGtt                                                 >  1:1480373/1‑91 (MQ=255)

                                             aacagcagtaagatatttcaaatagaaaaatatctcactgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCg                                               >  1:252727‑M2/46‑91 (MQ=255)

                                             AACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCg                                               <  2:3003543‑M1/91‑1 (MQ=255)

                                             AACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCg                                               >  2:2777735‑M1/1‑91 (MQ=255)

                                             AACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCg                                               <  2:3003912‑M1/91‑1 (MQ=255)

                                              acagcagtaagatatttcaaatagaaaaatatctcactgctgttCTTTATTTGCATAATTCGCACTCTGTCAAAATCATATAAAAGTTCGc                                              >  2:56721‑M2/45‑91 (MQ=255)

                                               CAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCt                                             >  2:1602280‑M1/1‑91 (MQ=255)

                                               CAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGATCGCt                                             <  2:3725732‑M1/91‑1 (MQ=255)

                                                agcagtaagatatttcaaatagaaaaatatctcactgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCtt                                            >  2:1861633‑M2/43‑91 (MQ=255)

                                                 GCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCttt                                           <  2:227952‑M1/91‑1 (MQ=255)

                                                 GCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCttt                                           >  2:3180432‑M1/1‑91 (MQ=255)

                                                 GCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCttt                                           >  1:1060240‑M1/1‑91 (MQ=255)

                                                 GCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCttt                                           >  1:2889238‑M1/1‑91 (MQ=255)

                                                 GCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCAGTTAAAATCATATAAAAGTTCGCttt                                           <  2:1370793‑M1/91‑1 (MQ=255)

                                                  CAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTTGCACTCTGTTAAAATCATATAAAAGTTCGCTTTa                                          <  2:1916023‑M1/91‑1 (MQ=255)

                                                   agtaagatatttcaaatagaaaaatatctcactgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTaa                                         >  1:1140043‑M2/40‑91 (MQ=255)

                                                   AGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTaa                                         <  2:3503960‑M1/91‑1 (MQ=255)

                                                   AGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTaa                                         >  1:543057‑M1/1‑91 (MQ=255)

                                                   AGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTaa                                         <  2:1057878‑M1/91‑1 (MQ=255)

                                                     taagatatttcaaatagaaaaatatctcactgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATg                                       >  2:2877591‑M2/38‑91 (MQ=255)

                                                     taagatatttcaaatagaaaaatatctcactgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATg                                       >  2:2878303‑M2/38‑91 (MQ=255)

                                                      gagaTATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGt                                      >  1:3820374/1‑91 (MQ=255)

                                                        gaTATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCa                                    >  1:951182/1‑91 (MQ=255)

                                                        gaTATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCa                                    <  1:2457507/91‑1 (MQ=255)

                                                        gaTATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCa                                    <  2:1954509/91‑1 (MQ=255)

                                                         atatTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCAt                                   >  2:3615438/1‑91 (MQ=255)

                                                           atTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTg                                 <  2:642864/91‑1 (MQ=255)

                                                            tttttCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGa                                >  2:1121020/1‑91 (MQ=255)

                                                            tttttCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGa                                >  2:2140849/1‑91 (MQ=255)

                                                            tttttCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGa                                <  1:307542/91‑1 (MQ=255)

                                                               ttCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACgt                             <  1:1643682/91‑1 (MQ=255)

                                                                tCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATTATATAAAAGTTCGCTTTAATGTCATTGACgta                            >  2:157887/1‑91 (MQ=255)

                                                                  tATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACgtatg                          >  1:1006527/1‑91 (MQ=255)

                                                                    tttGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACgtatgta                        >  2:3313765/1‑91 (MQ=255)

                                                                     ttGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACgtatgtat                       <  2:207929/91‑1 (MQ=255)

                                                                        aaaTATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAg                    <  2:2449685/91‑1 (MQ=255)

                                                                        aaaTATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAg                    <  2:3552568/91‑1 (MQ=255)

                                                                         aaTATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGc                   <  2:2887863/91‑1 (MQ=255)

                                                                            atCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGctct                >  1:3084325/1‑91 (MQ=255)

                                                                             tCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCtctc               <  1:206302/91‑1 (MQ=255)

                                                                             tCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCtctc               >  1:3788124/1‑91 (MQ=255)

                                                                             tCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCtctc               <  1:2246886/91‑1 (MQ=255)

                                                                             tCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCtctc               >  1:2770154/1‑91 (MQ=255)

                                                                             tCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTAGGTATAAGCtctc               <  1:3054041/91‑1 (MQ=255)

                                                                               ttACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCAt             >  1:3484596/1‑91 (MQ=255)

                                                                                tACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATg            >  2:2977407/1‑91 (MQ=255)

                                                                                 actgcttttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGt           >  2:2367513‑M2/10‑91 (MQ=255)

                                                                                  ctgctgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGtt          >  2:3206499‑M2/9‑91 (MQ=255)

                                                                                      cgttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTtaat      <  2:3920683‑M2/87‑1 (MQ=255)

                                                                                        ttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTtaataa    >  1:579664‑M2/3‑91 (MQ=255)

                                                                                        ttCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTtaataa    >  2:3359030‑M2/3‑91 (MQ=255)

                                                                                          cTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAataata  >  1:2032473/1‑91 (MQ=255)

                                                                                          cTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTACGTATAAGCTCTCATGTTTAataata  >  1:3669421/1‑91 (MQ=255)

ATTTGCCTGATACGTCCACAAGTACCAGATGCATAAATTCAGAAAAACAGCAGTGAGATATTTTTCTATTTGAAATATCTTACTGCTGTTCTTTATTTGCATAATTCGCACTCTGTTAAAATCATATAAAAGTTCGCTTTAATGTCATTGACGTATGTATAAGCTCTCATGTTTAATAATA  >  USA300TCH1516_ALE/2787457‑2787637

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.