| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 2810552 = | 215 (1.060) | 4 (0.020) | 4/150 | NT | 1.9% | coding (832/1212 nt) | secY2 | Accessory Sec system protein translocase subunit SecY2 |
| ? | USA300TCH1516_ALE | 2810585 = | 201 (1.050) | coding (799/1212 nt) | secY2 | Accessory Sec system protein translocase subunit SecY2 | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCAGCTTTTGTTTTCTTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGATGACATGCCAATGCTGACATTTGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2810646‑2810552‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgataTGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTGCCTG > USA300TCH1516_ALE/2810585‑2810674 TTCAGCTTTTGTTTTCTTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGATGACATGCCAATGCTGACATTT > 2:2637725/1‑91 TCAGCTTTTGTTTTCTTAAAGAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGATGACATGCCAATGCTGACATTTG > 1:321756/1‑91 TCAGCTTTTGTTTTCTTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCTGATGACATGCCAATGCTGACATTTG > 2:535315/1‑91 TCAGCTTTTGTTTTCTTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGATGACATGCCAATGCTGACATTTG > 1:1627288/1‑91 TCAGCTTTTGTTTTCTTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGATGACATGCCAATGCTGACATTTG < 1:1810305/91‑1 CAGCTTTTGTTTTCTTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGATGACATGCCAATGCTGACATTTGA < 2:942076/91‑1 CAGCTTTTGTTTTCTTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGATGACATGCCAATGCTGACATTTGA < 1:765500/91‑1 CAGCTTTTGTTTTCTTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGATGACATGCCAATGCTGACATTTGA < 1:527582/91‑1 CAGCTGTTGTTTTCTTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGATGACATGCCAATGCTGACATTTGA < 1:527176/91‑1 AGCTTTTGTTTTCTTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGCTGACATGCCAATGCTGACATTTGAT > 2:1249674/1‑91 AGCTTTTGTTTTCTTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGATGACATGCCAATGCTGACATTTGAT > 2:1249688/1‑91 AGCTTTTGTTTTCTTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGATGACATGCCAATGCTGACATTTGAT > 1:504096/1‑91 AGCTTTTGTTTTCTTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGATGACATGCCAATGCTGACATTTGAT > 2:419182/1‑91 AGCTTTTGTTTTCTTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGATGACATGCCAATGCTGACATTTGAT < 2:370685/91‑1 AGCTTTTGTTTTCTTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGATGACATGCCAATGCTGACATTTGAT > 2:1013364/1‑91 AGCTTTTGTTTTATTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGATGACATGCCAATGCTGACATTTGAT > 1:3035904/1‑91 GCTTTTGTTTTCTTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGATGACATGCCAATGCTGACATTTGATA > 2:1223173/1‑91 ATAAAAGCATATCAGATGACATGCCAATGCTGACATTTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAA > 1:974259/1‑91 AAGCATATCAGATGACATGCCAATGCTGACATTTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACA > 1:1366216/1‑91 ATCAGATGACATGCCAATGCTGACATTTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCT > 1:2126921/1‑91 GATGACATGCCAATGCTGACATTTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAA > 1:648984/1‑91 TGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTG < 2:353814/91‑1 TGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTG < 1:1117584/91‑1 TGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTG < 1:2020492/91‑1 GATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTGC < 1:1082306/91‑1 GATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTGC < 2:1427400/91‑1 GATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTGC < 1:705970/91‑1 GATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTGC < 1:1082305/91‑1 ATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTGCC < 2:3334381/91‑1 ATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTGCC > 1:971896/1‑91 ATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTGCC > 2:373142/1‑91 ATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTGCC < 1:675029/91‑1 ATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTGCCTG > 2:3167616/1‑91 ATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTGCCTG > 2:3167687/1‑91 ATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTGCCTG > 2:3167728/1‑91 ATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTGCCTG > 1:355413/1‑91 TTCAGCTTTTGTTTTCTTAAAAAGTGGCATTCATTTTATTTTATCTATGTTTAATAAAAGCATATCAGATGACATGCCAATGCTGACATTTGATA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/2810646‑2810552‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgataTGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTGCCTG > USA300TCH1516_ALE/2810585‑2810674 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |