BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2810552 =	215 (1.060)	4 (0.020)	4/150	NT	1.9%	coding (832/1212 nt)	secY2	Accessory Sec system protein translocase subunit SecY2
*	?	USA300TCH1516_ALE	2810585 =	201 (1.050)	4 (0.020)	4/150	NT	1.9%	coding (799/1212 nt)	secY2	Accessory Sec system protein translocase subunit SecY2
Rejected: Frequency below/above cutoff threshold.

Only 100 of 265 total aligned reads displayed.

ATAAAAAATAACCCAATAACATTTGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTGCCTGC  >  USA300TCH1516_ALE/2810495‑2810675

aTAAAAAATAACCCAATAACATTTGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCAGatat                                                                                            >  2:3209011/1‑91 (MQ=255)

 tAAAAAATAACCCAATAACATTTGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATg                                                                                           <  2:2676726/91‑1 (MQ=255)

  aaaaaaTAACCCAATAACATTTGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGc                                                                                          <  1:3008389/91‑1 (MQ=255)

  aaaaaaTAACCCAATAACATTTGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGc                                                                                          >  2:2193559/1‑91 (MQ=255)

   acaaaTAACGCACTAACAGTCGAATCACTCAAAATACCGACATACCTACTGGACTAGCAAATGTCAGCATGGGCATATCAGCTGACATGcc                                                                                         <  2:1644981/89‑2 (MQ=255)

   aaaaaTAACCCAATAACATTTGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCt                                                                                         >  2:2360704/1‑91 (MQ=255)

       aTAACCCAATAACATTTGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTtta                                                                                     <  2:345658/91‑1 (MQ=255)

        ttcttaaaaagtggcattcattttattttatctatgtttaataaaagcaTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTttat                                                                                    >  1:974259‑M1/50‑91 (MQ=255)

         aaCCCAATAACATTTGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTttatt                                                                                   >  2:1968083/1‑91 (MQ=255)

           cccAATAACATTTGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTaa                                                                                 >  2:2503903/1‑91 (MQ=255)

            ccAATAACATTTGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTaaa                                                                                >  2:604892/1‑91 (MQ=255)

            ccAATAACATTTGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTaaa                                                                                <  1:872884/91‑1 (MQ=255)

             cAATAACATTTGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAAc                                                                               >  1:2008922/1‑91 (MQ=255)

                tAACATTTGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATa                                                                            >  1:160948/1‑91 (MQ=255)

                   cATGTGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGat                                                                         <  2:2740753/91‑1 (MQ=255)

                     tttGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGataa                                                                       >  1:3717199/1‑91 (MQ=255)

                     tttGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGataa                                                                       >  2:2858449/1‑91 (MQ=255)

                      ttGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGataaa                                                                      <  2:429984/91‑1 (MQ=255)

                       tGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGataaaa                                                                     <  2:3926567/91‑1 (MQ=255)

                        gAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGataaaat                                                                    <  2:2062759/91‑1 (MQ=255)

                        gAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGataaaat                                                                    <  2:3702805/91‑1 (MQ=255)

                        gAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGataaaat                                                                    <  2:667408/91‑1 (MQ=255)

                        aaaTCACTGACGATACTGAAATACCTTCTGGACGATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACAGAGataaaat                                                                    <  2:3606195/90‑1 (MQ=255)

                            cACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGAtaaaataaaa                                                                >  2:1937062/1‑91 (MQ=255)

                            cACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGAtaaaataaaa                                                                <  1:836434/91‑1 (MQ=255)

                            cACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGAtaaaataaaa                                                                >  1:510334/1‑91 (MQ=255)

                              cTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAaatg                                                              >  2:2705067/1‑91 (MQ=255)

                              cTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAaatg                                                              >  2:3374012/1‑91 (MQ=255)

                              cTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAaatg                                                              >  1:1060349/1‑91 (MQ=255)

                                 aaTATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAaatgaat                                                           <  2:1164410/91‑1 (MQ=255)

                                 aaTATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAaatgaat                                                           <  1:1367668/91‑1 (MQ=255)

                                  atatACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAaatgaatg                                                          <  2:485651/91‑1 (MQ=255)

                                  atatACTGAAATACCTACTGGACTAGCAAATGTCAGCATCGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAaatgaatg                                                          <  1:3669212/91‑1 (MQ=255)

                                   tataCTGCAATACCTACTGGACTATCAAATGTTAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATCAAATAAAATGAATGc                                                         <  1:3365375/91‑1 (MQ=255)

                                   tataCTGAGATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGc                                                         <  2:2331644/91‑1 (MQ=255)

                                   tataCTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGc                                                         >  1:2796111/1‑91 (MQ=255)

                                   tagaCTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGc                                                         <  1:1363063/88‑1 (MQ=255)

                                    ataCTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGcc                                                        <  1:406786/91‑1 (MQ=255)

                                      aCTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCAc                                                      <  2:3038265/91‑1 (MQ=255)

                                       cTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACt                                                     >  1:998039/1‑91 (MQ=255)

                                       cTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACt                                                     <  1:446243/91‑1 (MQ=255)

                                       cTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACt                                                     >  1:2050740/1‑91 (MQ=255)

                                         gAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACttt                                                   <  1:58320/91‑1 (MQ=255)

                                         gAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACttt                                                   <  1:2247050/91‑1 (MQ=255)

                                         gAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACttt                                                   <  1:58668/91‑1 (MQ=255)

                                          aaaTACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACtttt                                                  >  2:3416538/1‑91 (MQ=255)

                                          aaaTACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACtttt                                                  >  1:2814377/1‑91 (MQ=255)

                                              aCCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAg                                              <  2:3748359/91‑1 (MQ=255)

                                               ccTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGa                                             >  1:3830640/1‑91 (MQ=255)

                                                cTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGaa                                            >  2:3772822/1‑91 (MQ=255)

                                                 tACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTtaataat                                           >  2:1484376/1‑90 (MQ=255)

                                                 tACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGaaa                                           >  1:2178682/1‑91 (MQ=255)

                                                 tACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGaaa                                           >  2:2365456/1‑91 (MQ=255)

                                                 tACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGaaa                                           >  1:2178269/1‑91 (MQ=255)

                                                 tACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGaaa                                           >  2:3765794/1‑91 (MQ=255)

                                                  aCTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGaaaa                                          <  1:2452988/91‑1 (MQ=255)

                                                  aCTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTCAAGaaaa                                          <  1:316005/91‑1 (MQ=255)

                                                   cTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAAc                                         >  1:1110751/1‑91 (MQ=255)

                                                       aCTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACaaaa                                     >  2:151923/1‑91 (MQ=255)

                                                       aCTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACaaaa                                     >  2:2585689/1‑91 (MQ=255)

                                                        cTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAACATGAATGCCACTTTTTAAGAAAACAAAAg                                    >  1:2705531/1‑91 (MQ=255)

                                                        cTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAg                                    <  1:3841370/91‑1 (MQ=255)

                                                        cTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAg                                    >  2:1077127/1‑91 (MQ=255)

                                                          ATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCt                                  >  2:1249688‑M1/1‑91 (MQ=255)

                                                           TCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAACAGCTg                                 <  1:527176‑M1/91‑1 (MQ=255)

                                                           TCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTg                                 <  1:765500‑M1/91‑1 (MQ=255)

                                                            CAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGa                                >  1:1627288‑M1/1‑91 (MQ=255)

                                                            CAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGa                                <  1:1810305‑M1/91‑1 (MQ=255)

                                                              gatgacatgccaatgctgacatttgataTGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGaaa                              >  1:648984‑M2/29‑91 (MQ=255)

                                                              aaTGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGaaa                              <  2:791064/91‑1 (MQ=255)

                                                              aaTGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGaaa                              <  1:1758157/91‑1 (MQ=255)

                                                               aTGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAAt                             >  2:160874/1‑91 (MQ=255)

                                                                tGTCAGCCTTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACATTTTAAGACAACAAAAGCTGAAATa                            >  1:3226822/1‑91 (MQ=255)

                                                                 gTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATAc                           >  2:3177955/1‑91 (MQ=255)

                                                                  tCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTAAAATACt                          >  2:3517160/1‑91 (MQ=255)

                                                                    aGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACtca                        >  1:188383/1‑91 (MQ=255)

                                                                      cATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACtcatc                      >  1:2363001/1‑91 (MQ=255)

                                                                       aTTGGCATGTCATCTGATATGCTTTTATTAAACTTAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACtcatca                     <  1:3503961/91‑1 (MQ=255)

                                                                       aTTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACtcatca                     >  1:1689847/1‑91 (MQ=255)

                                                                        ttGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTcatcat                    <  1:103032/91‑1 (MQ=255)

                                                                         tGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCAtt                   <  1:570767/91‑1 (MQ=255)

                                                                         tGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCAtt                   >  2:3315325/1‑91 (MQ=255)

                                                                               gTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTa             <  1:1373739/91‑1 (MQ=255)

                                                                               gTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTa             <  1:2290419/91‑1 (MQ=255)

                                                                                tCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTaa            >  1:2611099/1‑91 (MQ=255)

                                                                                tCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTaa            >  2:2499303/1‑91 (MQ=255)

                                                                                 cATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAAt           >  2:3656468/1‑91 (MQ=255)

                                                                                   tCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATAc         <  1:1554779/91‑1 (MQ=255)

                                                                                    cTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATAct        >  2:2601969/1‑91 (MQ=255)

                                                                                    cTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATAct        >  2:1240826/1‑91 (MQ=255)

                                                                                    cTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATAct        >  2:2457776/1‑91 (MQ=255)

                                                                                     tgataTGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATActg       <  1:2020492‑M2/86‑1 (MQ=255)

                                                                                      gataTGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATActgc      <  2:1427400‑M2/87‑1 (MQ=255)

                                                                                      gataTGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATActgc      <  1:705970‑M2/87‑1 (MQ=255)

                                                                                       ataTGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATActgcc     >  2:373142‑M2/4‑91 (MQ=255)

                                                                                       ataTGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATActgcc     <  1:675029‑M2/88‑1 (MQ=255)

                                                                                         aTGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATActgcctg   >  1:355413‑M2/2‑91 (MQ=255)

                                                                                         aTGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATActgcctg   >  2:3167687‑M2/2‑91 (MQ=255)

                                                                                          tGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATActgcctgc  <  1:1089142/91‑1 (MQ=255)

                                                                                          tGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTAAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATActgcctgc  >  2:3057412/1‑91 (MQ=255)

ATAAAAAATAACCCAATAACATTTGAATCACTAAATATACTGAAATACCTACTGGACTATCAAATGTCAGCATTGGCATGTCATCTGATATGCTTTTATTAAACATAGATAAAATAAAATGAATGCCACTTTTTAAGAAAACAAAAGCTGAAATACTCATCATTAAAGTAATACTGCCTGC  >  USA300TCH1516_ALE/2810495‑2810675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.