| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 458360 = | NA (NA) | 5 (0.030) | 4/148 | NT | NA | coding (970/1557 nt) | hsdM_1 | Type I restriction enzyme EcoKI M protein |
| ? | USA300TCH1516_ALE | 458396 = | NA (NA) | coding (1006/1557 nt) | hsdM_1 | Type I restriction enzyme EcoKI M protein | |||||
TGGGAGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/458455‑458360‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgccTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAGAA > USA300TCH1516_ALE/458396‑458485 TGGGAGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGT > 2:1686110/1‑91TGGGAGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGT > 2:1396704/1‑91TGGGAGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGT < 1:820041/91‑1TGGGAGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGT > 1:2334450/1‑91TGGGAGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGT > 1:554894/1‑91 GGGAGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTT > 2:362289/1‑91 GGGAGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTT < 2:1685988/91‑1 GGGAGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTT > 2:2196429/1‑91 GGAGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTT < 1:3843220/91‑1 GGAGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTT > 2:1948587/1‑91 GGAGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTT < 1:2489623/91‑1 GAGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTG < 2:1594491/91‑1 GAGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTG > 1:61209/1‑91 gGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAATGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGC < 2:2584435/90‑1 AGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGC < 2:1391242/91‑1 AGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGC > 2:135766/1‑91 AGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGC > 2:2298898/1‑91 AGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGGACCATGTGTGGAATAAAGGCAAAGCCTGCTTTAGACTTAGGCGCAAGTTTGC < 2:2584836/91‑1 GTACAACGGCCATGGTACCTTCATCGTCTATGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCC < 2:3575519/91‑1 GTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCC > 1:1143676/1‑91 GTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCC < 2:136875/91‑1 GTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCC > 1:3866342/1‑91 GTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCC > 1:3809974/1‑91 GTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCC < 1:3530707/91‑1 GTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCC > 1:2883134/1‑91 GGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTAC > 1:87597/1‑91 GCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACT > 1:2594419/1‑91 AAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCTTTATTCAACACATGGTACATTACATAGACGATGAAGGTACCATTGCAGATGTACTCCC > 2:247405/1‑91 CTGCTTTAGACTTAGGCGCAAGTTTGCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACAT > 1:3940988/1‑91 CTGCTTTAGACTTAGGCGCAAGTTTGCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACAT > 1:1166098/1‑91 TTTGCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTG < 2:3253115/91‑1 TTTGCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTG > 2:2030892/1‑91 TTTGCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGGACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTG < 1:3141124/91‑1 tttCCTTTATTCAACACAGGGCACATTCCCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGTGGTGCTGC > 2:2365310/4‑91 TTGCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGC > 2:1164436/1‑91 TTGCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGC < 2:2603510/91‑1 TTGCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGC < 1:3022615/91‑1 TTGCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACGCCCACATGGTGTATTATTCCGAGGTGCTGC < 2:2603520/91‑1 TGCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCA < 1:1103940/91‑1 TGCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCA < 1:2259878/91‑1 GCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAG > 2:963858/1‑91 GCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAG < 1:1231350/91‑1 GCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAG > 1:1513495/1‑91 GCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAG > 1:1513543/1‑91 GCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAG < 1:766384/91‑1 CCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAGA < 1:3001573/91‑1 CCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAGA < 2:3330158/91‑1 CCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAGA < 2:1704502/91‑1 CCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAGA > 2:2016458/1‑91 CTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAGAA > 1:3105218/1‑91 CTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAGAA > 2:2907558/1‑91 CTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAGAA > 2:207252/1‑91 CTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAGAA < 1:1247578/91‑1 TGGGAGTACAACGGCCATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/458455‑458360‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgccTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAGAA > USA300TCH1516_ALE/458396‑458485 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |