New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	458360 =	NA (NA)	5 (0.030)	4/148	NT	NA	coding (970/1557 nt)	hsdM_1	Type I restriction enzyme EcoKI M protein
	?	USA300TCH1516_ALE	458396 =	NA (NA)					coding (1006/1557 nt)	hsdM_1	Type I restriction enzyme EcoKI M protein

CATTTGATGCGGTTATTGCGAACCCACCGTATAGTGCGAAATGGACTGCAGATTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGG  >  USA300TCH1516_ALE/458271‑458361                                                                                          |  cagttGATGCGGTTATTGCGAACCCACCGTATAGTGCGAAATGGACTGCAGATTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACgg  <  2:2648169/88‑1 (MQ=1)                                                                                          |  CATTTGATGCGGTTATTGCGAACCCACCGTATAGTGCGAAATGGACTGCAGATTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGG  >  USA300TCH1516_ALE/458271‑458361

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.