| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 458414 | NA (NA) | 5 (0.030) | 4/144 | NT | NA | coding (1024/1557 nt) | hsdM_1 | Type I restriction enzyme EcoKI M protein |
| ? | USA300TCH1516_ALE | = 458432 | NA (NA) | coding (1042/1557 nt) | hsdM_1 | Type I restriction enzyme EcoKI M protein | |||||
TGCAGATTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/458317‑458414‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggtacCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAATCGTT < USA300TCH1516_ALE/458432‑458343 TGCAGATTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACAC < 2:2225783/91‑1 GCAGATTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACA < 2:3220298/91‑1 GCAGATTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACA < 1:3395095/91‑1 GCAGATTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACA > 2:502102/1‑91 GCAGATTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACA > 2:3305381/1‑91 GCAGATTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTATGCCTTTATTCAACACA > 1:3392116/1‑91 CAGATTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACAT < 2:3080241/91‑1 CAGATTCAAACTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACGTGCGCCAAAGTCTCAAGCAGACTTTGCCTTTATCCAACACAT > 2:2194438/1‑91 AGATTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATG > 1:2087121/1‑91 GATTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGG < 1:337820/91‑1 ATTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGT > 1:1186219/1‑91 ATTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGT < 2:127327/91‑1 ATTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGT < 2:2652353/91‑1 TTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGTA > 2:905758/1‑91 TTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGTA > 2:3256951/1‑91 TTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGTA > 1:2022615/1‑91 TTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGTA > 1:1773667/1‑91 TTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGTA > 2:905852/1‑91 TTCAAAGGTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCATCACATGGTA < 1:1971511/91‑1 TCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGTAC < 1:744067/91‑1 AACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGTACCTTCATCGTCTAGGTAATG < 1:380230/91‑1 ACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGTACCTTCATCGTCTAGGTAATGT < 2:718938/91‑1 ACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGTACCTTCATCGTCTAGGTAATGT < 2:2433186/91‑1 CGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGTACCTTCATCGTCTAGGTAATGTA < 1:1895529/91‑1 GATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGTACCTTCTTCGTCTAGGTAATGTAC < 1:1239102/91‑1 CATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTG > 1:924757/1‑91 CATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTG < 2:1992779/91‑1 CATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTG < 2:3461291/91‑1 ATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGA < 1:3153468/91‑1 ATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGA < 2:1885449/91‑1 ATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGA > 2:3282030/1‑91 ATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGA < 1:3698517/91‑1 ATGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGA < 2:2593379/91‑1 TGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATACAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAA > 2:2334811/1‑91 TGGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAA < 2:711027/91‑1 TGGTACCCTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAA > 2:219564/1‑91 GGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAAT > 1:3515597/1‑91 GGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAAT > 1:1750107/1‑91 GGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAAT > 1:3515247/1‑91 GGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAAT > 2:3168993/1‑91 GGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAAT < 1:408789/91‑1 GGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAAT > 2:2432002/1‑91 GGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAAT > 1:3707075/1‑91 GGTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAAT > 2:1831438/1‑91 GTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAATC > 1:3586418/1‑91 GTACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAATC > 1:800877/1‑91 TACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAATCG > 1:2732814/1‑91 TACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAATCG < 2:676272/91‑1 TACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAATCG > 2:423391/1‑91 ACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAATCGT > 2:2513471/1‑91 ACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAATCGT < 2:880113/91‑1 ACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAATCGT > 1:3929247/1‑91 ACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAATCGT < 2:3494996/91‑1 ACCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAATCGT > 1:3391442/1‑91 CCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAATCGTT < 2:3891296/91‑1 CCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAATCGTT > 1:2855986/1‑91 CCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAATCGTT > 1:3711643/1‑91 CCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAATCGTT > 1:3500164/1‑91 TGCAGATTCAAAGTTTGAAAATGACGAACGATTCAGTGGTTACGGCAAACTTGCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/458317‑458414‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑catggtacCTTCATCGTCTAGGTAATGTACCATGTGTTGAATAAAGGCAAAGTCTGCTTTAGACTTAGGCGCAAGTTTGCCGTAACCACTGAATCGTT < USA300TCH1516_ALE/458432‑458343 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |