New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | USA300TCH1516_ALE | = 458414 | NA (NA) | 5 (0.030) | 4/144 | NT | NA | coding (1024/1557 nt) | hsdM_1 | Type I restriction enzyme EcoKI M protein |
? | USA300TCH1516_ALE | = 458432 | NA (NA) | coding (1042/1557 nt) | hsdM_1 | Type I restriction enzyme EcoKI M protein |
GCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAGAAGGTGTCATTCG > USA300TCH1516_ALE/458369‑458496 | gcaccTAAGTCTAAAGAAGACTTTGCCTTTATTCAACACATGGTACATTACCTAGACGGTGAAGGTACCATGGCCGTAGTATTCTCACATg > 2:1115230/4‑91 (MQ=1) acgtGGTACATTACCTAGACGGTGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAGAAGGTGTCATtcg < 2:1351437/88‑1 (MQ=0) | GCGCCTAAGTCTAAAGCAGACTTTGCCTTTATTCAACACATGGTACATTACCTAGACGATGAAGGTACCATGGCCGTTGTACTCCCACATGGTGTATTATTCCGAGGTGCTGCAGAAGGTGTCATTCG > USA300TCH1516_ALE/458369‑458496 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |