New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 492723	112 (0.550)	28 (0.170)	10/128	NT	22.1%	intergenic (+145/+40)	sle1_1/USA300HOU_RS02345	N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein
	?	USA300TCH1516_ALE	= 492741	108 (0.660)					intergenic (+163/+22)	sle1_1/USA300HOU_RS02345	N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein

TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/492618‑492723 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggattggtcgaaCATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAAA  <  USA300TCH1516_ALE/492741‑492652                                                                                                                                                                                                      TTTCTCTAGCTGAAAAGTTGGATTGAATACTGAATTTTATGGTGGGGCTATCATAGACGTGATTGTTGTAATAGGAATTTTTGTATATGAA                                                                                                           <  2:241932/91‑1 TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAA                                                                                                           <  1:294801/91‑1 TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAA                                                                                                           <  1:1856925/91‑1  TTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAA                                                                                                          <  2:3947990/91‑1   TCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA                                                                                                         >  1:1301793/1‑91   TCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAA                                                                                                         >  2:1451741/1‑91    CACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAA                                                                                                        <  1:638651/91‑1    CACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAA                                                                                                        <  1:2006047/91‑1    CACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAA                                                                                                        <  1:2006090/91‑1    CACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAA                                                                                                        <  1:3711239/91‑1     ACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAG                                                                                                       >  1:2555717/1‑91     ACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGCCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAG                                                                                                       >  1:3336367/1‑91      CAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGG                                                                                                      <  2:3610315/91‑1       AAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGA                                                                                                     >  2:1758747/1‑91       AAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGA                                                                                                     >  1:2258044/1‑91       AAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGA                                                                                                     <  1:530937/91‑1       AAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGA                                                                                                     <  2:189629/91‑1       AAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGA                                                                                                     <  1:531101/91‑1        AGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAATGAT                                                                                                    >  1:3188687/1‑91        AGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAT                                                                                                    <  2:3071950/91‑1        AGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAT                                                                                                    <  2:84488/91‑1        AGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAT                                                                                                    <  1:1659818/91‑1        AGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGAT                                                                                                    <  1:1659869/91‑1         GCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATT                                                                                                   >  1:2879651/1‑91         GCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATT                                                                                                   <  2:3727620/91‑1         GCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATT                                                                                                   >  1:2022715/1‑91           TGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGG                                                                                                 <  1:2508227/91‑1            GAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGT                                                                                                <  1:2865259/91‑1            GAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGT                                                                                                >  2:1365689/1‑91            GAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGT                                                                                                <  2:2191376/91‑1            GAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGT                                                                                                >  2:1617749/1‑91            GAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGT                                                                                                >  2:2053260/1‑91            GAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGT                                                                                                <  1:2657885/91‑1            GAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGGGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGT                                                                                                >  1:875818/1‑91             AAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTC                                                                                               >  1:635184/1‑91              AAAGTTGGATTGAATCCTAAATTTTTTGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG                                                                                              >  2:3376283/1‑91              AAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCG                                                                                              <  1:115149/91‑1              AAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAAATTTTGTATATGAAAAAGGATTGGTCG                                                                                              >  2:2044294/1‑91               AAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTTGTCGA                                                                                             >  2:2266730/1‑91               AAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGA                                                                                             <  2:3649498/91‑1               AAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATCGCTGTAATAGGAATTTTTGTATATGAAAAAGGATTTGTCGA                                                                                             >  2:2266714/1‑91               AAGTTGGATGGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGA                                                                                             <  2:146401/91‑1                              CTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAG                                                                              <  2:3338591/91‑1                              CTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAG                                                                              <  1:2973081/91‑1                              CTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAG                                                                              <  2:3339669/91‑1                              CTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAG                                                                              <  2:3339089/91‑1                               tagATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGT                                                                             <  2:652499/88‑1                               TAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGT                                                                             <  1:269086/91‑1                                 AATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTC                                                                           <  2:3025370/91‑1                                 AATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTC                                                                           <  2:2868833/91‑1                                  ATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCA                                                                          <  2:1191940/91‑1                                  ATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCA                                                                          <  2:2740157/91‑1                                   TTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCAT                                                                         <  2:2812474/91‑1                                   TTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCAT                                                                         <  2:2812461/91‑1                                    TTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATT                                                                        <  1:3877444/91‑1                                    TTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATT                                                                        <  1:3877518/91‑1                                    TTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATT                                                                        <  2:466283/91‑1                                     TTATGGCGGTGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTC                                                                       <  1:3551013/91‑1                                     TTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTC                                                                       <  2:2881481/91‑1                                     TTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTC                                                                       <  2:2881615/91‑1                                     TTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTC                                                                       <  2:470293/91‑1                                     TTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTC                                                                       <  2:32745/91‑1                                     TTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTC                                                                       <  1:1442399/91‑1                                      TATGGCGGGGGTATCAAAGTCGGGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCG                                                                      <  2:1344087/91‑1                                      TATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCG                                                                      <  2:1879756/91‑1                                      TATGGCGGGGCTATCAAAGTCGTGATGGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCG                                                                      <  2:1344100/91‑1                                        TGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGAC                                                                    <  1:1914453/91‑1                                        TGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGAC                                                                    <  1:3921304/91‑1                                              GGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCC                                                              <  2:2976490/91‑1                                              GGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCC                                                              <  2:2952154/91‑1                                                                                           AAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGAT                 <  2:2703894/91‑1                                                                                           AAAAGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGAT                 >  1:900728/1‑91                                                                                              AGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGC              >  1:2650912/1‑91                                                                                              AGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGC              >  2:2927082/1‑91                                                                                              AGGATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGC              >  2:2927096/1‑91                                                                                                GATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCC            <  1:725879/91‑1                                                                                                GATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCC            >  1:804273/1‑91                                                                                                 ATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATAACAACAATCACGACTTTGATAGCCCC           <  2:2249293/91‑1                                                                                                 ATTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATAACAACAATCACGACTTTGATAGCCCC           <  2:2250038/91‑1                                                                                                  TTGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAACAATTCCTATTACAACAATCACGACTTTGATAGCCCCG          >  2:3799800/1‑91                                                                                                  TTGGTCGAACATAGAACATGAAGTGCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCG          <  2:2587149/91‑1                                                                                                   TGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGC         >  1:921015/1‑91                                                                                                   TGGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGC         <  1:2843553/91‑1                                                                                                    GGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCC        >  1:3859652/1‑91                                                                                                    GGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCC        >  1:2786990/1‑91                                                                                                    GGTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCC        >  1:2297593/1‑91                                                                                                     GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCA       <  1:694847/91‑1                                                                                                     GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCA       >  1:2447896/1‑91                                                                                                     GTCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAACCACGACTTTGATAGCCCCGCCA       <  1:847798/91‑1                                                                                                      TCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCAT      <  2:140810/91‑1                                                                                                      TCGAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCAT      <  2:3855364/91‑1                                                                                                        GAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAA    <  2:1961149/91‑1                                                                                                        GAACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAA    >  1:124444/1‑91                                                                                                         AACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAA   <  1:306504/91‑1                                                                                                          ACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCCCGCCTTTGATAGCCCCGCCATAAAA  <  1:2818084/91‑1                                                                                                          ACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAAA  <  1:3304474/91‑1                                                                                                          ACATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAAA  <  2:2278695/91‑1                                                                                                                                                                                                      TTTCACAAGCTGAAAAGTTGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  USA300TCH1516_ALE/492618‑492723 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaggattggtcgaaCATAGAACATGAAGTTCATTCGACCAATCCTTTTTCATATACAAAAATTCCTATTACAACAATCACGACTTTGATAGCCCCGCCATAAAA  <  USA300TCH1516_ALE/492741‑492652

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.