| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 492723 | 112 (0.550) | 28 (0.170) | 10/128 | NT | 22.1% | intergenic (+145/+40) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein |
| ? | USA300TCH1516_ALE | = 492741 | 108 (0.660) | intergenic (+163/+22) | sle1_1/USA300HOU_RS02345 | N‑acetylmuramoyl‑L‑alanine amidase sle1/hypothetical protein | |||||
Only 100 of 269 total aligned reads displayed.
TGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTT > USA300TCH1516_ALE/492636‑492813 | ggATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGaa < 1:3407322/91‑1 (MQ=255) gATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAAc < 1:75204/91‑1 (MQ=255) aTTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACt > 1:935538/1‑91 (MQ=255) tGAATCCTAAACTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATAAGAAAAAGGATTGGTCGAATGAACTTc < 2:1697482/91‑1 (MQ=255) ccTAAATTTTATGGCGGGGCTATCATAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGtt < 1:3664422/91‑1 (MQ=255) cTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaag < 2:3339089‑M1/91‑15 (MQ=255) tAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagt < 1:269086‑M1/91‑16 (MQ=255) tAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCt < 1:1687096/91‑1 (MQ=255) aacaaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCt > 2:2430973‑M1/61‑91 (MQ=255) aaaTTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTa > 1:513388/1‑91 (MQ=255) aaTTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttc < 2:2868833‑M1/91‑18 (MQ=255) aaacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATg > 2:3625691‑M1/58‑91 (MQ=255) aTTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATg < 1:2994665/91‑1 (MQ=255) ttttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcat < 2:2812461‑M1/91‑20 (MQ=255) ttttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGt < 2:2278695‑M2/91‑2 (MQ=255) aacggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGt > 1:2334522‑M1/57‑91 (MQ=255) tttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcatt < 2:466283‑M1/91‑21 (MQ=255) acggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGtt > 2:2926769‑M1/56‑91 (MQ=255) ttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcattc < 2:2881615‑M1/91‑22 (MQ=255) ttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcattc < 1:1442399‑M1/91‑22 (MQ=255) ttATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttc < 2:1961149‑M2/91‑4 (MQ=255) tATGGCGGGGGTATCAAAGTCGGGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcattcg < 2:1344087‑M1/91‑23 (MQ=255) tATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcattcg < 2:1879756‑M1/91‑23 (MQ=255) ggtgctagattatttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCg > 1:1459624‑M1/54‑91 (MQ=255) aTGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcga < 2:140810‑M2/91‑6 (MQ=255) tGGCGGGGCTATCAAAGTCGTGGTTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgac < 1:847798‑M2/91‑7 (MQ=255) tGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAAcatagaacatgaagttcattcgac < 1:1914453‑M1/91‑25 (MQ=255) ggCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgacc > 1:2297593‑M2/1‑84 (MQ=255) gCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgacca < 1:2843553‑M2/91‑9 (MQ=255) cGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTGTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaa > 2:3799800‑M2/1‑82 (MQ=255) gggCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatc > 1:804273‑M2/1‑80 (MQ=255) gCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcct > 2:2927096‑M2/1‑78 (MQ=255) atttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCttt > 2:3230114‑M1/43‑91 (MQ=255) atttacaagcattcgcaaagtaaaacatgaatactaattcagAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCttt > 2:1260252‑M1/43‑91 (MQ=255) aTCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcctttt > 1:900728‑M2/1‑75 (MQ=255) aTCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcctttt < 2:2703894‑M2/91‑17 (MQ=255) gTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAAt > 2:3950385/1‑91 (MQ=255) tCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAAtt > 2:100207/1‑91 (MQ=255) gcGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAAtt < 2:2155691/90‑1 (MQ=255) cGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTa > 1:3257586/1‑91 (MQ=255) tGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGt < 1:950705/91‑1 (MQ=255) aTTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAt > 1:2784325/1‑91 (MQ=255) aTTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAt > 1:2784429/1‑91 (MQ=255) ttgttgTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAtt < 1:2098247/91‑1 (MQ=255) ttgttgTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTAtt > 1:89666/1‑91 (MQ=255) ttgtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCAt > 2:1823584/1‑91 (MQ=255) ttgtAATAGGAATTTTTGTATATGAAAAAGGATCGGTAGAATGAACCTCATGTTCTATGATCGACCAATCCTTTTCTGAATTAGTATTCAt > 1:3157541/1‑91 (MQ=255) tgtAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATg > 1:1563661/1‑91 (MQ=255) tAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGtt < 1:436825/91‑1 (MQ=255) tAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGtt > 1:194576/1‑91 (MQ=255) tAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGtt < 2:3351499/91‑1 (MQ=255) aaTAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGttt > 2:2651645/1‑91 (MQ=255) aaTAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGttt > 1:1795870/1‑91 (MQ=255) tAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTa < 1:3544049/91‑1 (MQ=255) ggAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACt > 1:257712/1‑91 (MQ=255) ggAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACt < 1:3392419/91‑1 (MQ=255) ggAATTTTGGTATATGAAAAAGGATGGGTCGAATGAACTTCGTTTTCTATGTTCGTCCGATCCTGTTCTGGATTAGTATTCATGTTTTACt < 2:3462265/91‑1 (MQ=255) gAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACtt > 1:1947890/1‑91 (MQ=255) aaTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACttt < 2:2503962/91‑1 (MQ=255) aaTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACttt > 2:1279765/1‑91 (MQ=255) aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg > 1:3424285/1‑91 (MQ=255) aTTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTg < 1:3299723/91‑1 (MQ=255) ttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCg < 1:2061171/91‑1 (MQ=255) ttttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCg < 2:1577151/91‑1 (MQ=255) tttGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGa > 2:2518246/1‑91 (MQ=255) tataTGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGc < 2:847798/91‑1 (MQ=255) atatGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCt > 1:189734/1‑91 (MQ=255) atatGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCt > 1:2477825/1‑91 (MQ=255) atatGAAAAAGGATTGGTCGAATGAACTTAATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCt < 1:396260/91‑1 (MQ=255) gAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTa < 2:3081441/91‑1 (MQ=255) aaaaGGATTGGTCGAAGGAACTTCATGTTCTATGTTCGACCCATCCTTTTCTGTATTAGTAATCATGGTTTACATTGCGAATGCTTGTaaa < 2:195936/91‑1 (MQ=255) AAACGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaat > 1:3558307‑M1/1‑91 (MQ=255) AAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaata > 2:2333229‑M1/1‑91 (MQ=255) aGGATTGGTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagc > 2:2927082‑M1/1‑13 (MQ=255) ggATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagcc < 2:2976490‑M2/91‑62 (MQ=255) ggATTGGTCGAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagcc < 2:2952154‑M2/91‑62 (MQ=255) GGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAaataat < 2:3527442‑M1/91‑1 (MQ=255) gATTGGTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccc < 1:725879‑M1/91‑81 (MQ=255) aTTGGTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctataacaacaatcacgactttgatagcccc < 2:2249293‑M1/91‑82 (MQ=255) aTTGGTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctataacaacaatcacgactttgatagcccc < 2:2250038‑M1/91‑82 (MQ=255) TTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTa < 2:385190‑M1/91‑1 (MQ=255) TGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAg > 1:1004895‑M1/1‑91 (MQ=255) TGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAg < 2:1935116‑M1/91‑1 (MQ=255) ggTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgcc > 1:3859652‑M1/1‑7 (MQ=255) gTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgcca > 1:2447896‑M1/1‑6 (MQ=255) gTCGAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgcca < 1:694847‑M1/91‑86 (MQ=255) cGAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaaccatcacgactttgatagccccgccata < 2:1344100‑M2/91‑70 (MQ=255) CGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCAcc < 1:644789‑M1/91‑1 (MQ=255) gAAcatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataa > 1:124444‑M1/1‑3 (MQ=255) gAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataa < 2:32745‑M2/91‑71 (MQ=255) gAATGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataa < 2:470293‑M2/91‑71 (MQ=255) aacatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaa < 1:306504‑M1/91‑90 (MQ=255) aaTGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaa < 1:3877518‑M2/91‑72 (MQ=255) aaTGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaa < 1:3877444‑M2/91‑72 (MQ=255) acatagaacatgaagttcattcgaccaatcctttttcatatacaaaaattcctattacaacaatcccgcctttgatagccccgccataaaa < 1:2818084‑M1/91‑91 (MQ=255) aTGAACTTCATGTTCTATGttcgaccaatcctttttcatatacaaaaattcctattacaacaatcacgactttgatagccccgccataaaa < 2:2812474‑M2/91‑73 (MQ=255) ATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGtt > 1:2189934‑M1/1‑91 (MQ=255) ATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGtt > 1:1640619‑M1/1‑91 (MQ=255) ATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGtt < 2:3897617‑M1/91‑1 (MQ=255) ATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGtt < 1:1097057‑M1/91‑1 (MQ=255) | TGGATTGAATCCTAAATTTTATGGCGGGGCTATCAAAGTCGTGATTGTTGTAATAGGAATTTTTGTATATGAAAAAGGATTGGTCGAATGAACTTCATGTTCTATGTTCGACCAATCCTTTTCTGAATTAGTATTCATGTTTTACTTTGCGAATGCTTGTAAATAATCTAGCACCGTT > USA300TCH1516_ALE/492636‑492813 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |