| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1040357 = | 197 (0.970) | 19 (0.110) | 9/132 | NT | 10.5% | intergenic (+18/+70) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1040412 = | 161 (0.960) | intergenic (+73/+15) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein | |||||
Only 100 of 106 total aligned reads displayed.
GCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1040460‑1040357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATGTAATTG > USA300TCH1516_ALE/1040412‑1040501 GCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCCAACGGAGTGTTGAAGTCAACATTTCCCAT > 2:167051/1‑91GCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCAT < 1:2243552/91‑1GCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCAT > 1:3549881/1‑91 CTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATT < 1:1714855/91‑1 CTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATT < 1:2342379/91‑1 CTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATT < 1:1714856/91‑1 CTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATT < 1:3611528/91‑1 TTTTTTTCAGTTTGCCGTTGTTACTTTCATACCTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTG > 1:2336814/1‑91 TTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTG > 1:3622997/1‑91 TTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTG > 1:2336632/1‑91 TTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTG < 2:3398465/91‑1 TTTTTCAGTTTGCCGTTGTTACTTTCATAACTTNGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGAT < 1:1237636/91‑1 TTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGAT < 1:2546811/91‑1 TTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGAT < 1:1902897/91‑1 TTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGAT < 1:246888/91‑1 TTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGAT < 2:1476666/91‑1 TTTTTAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATT > 2:1135239/1‑91 TTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATT > 2:2151346/1‑91 TTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATT > 1:2227072/1‑91 TTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGTGTGTTGAAGTCAACATTTCCCATTGCTTG > 2:2659979/1‑91 TTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTG < 2:1497481/91‑1 taCAGTTAGCAGTTGCTACTTTCATAACTTAGTAACACAGTATAAGAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGG < 2:3476893/89‑1 TTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGG > 1:3240615/1‑91 TTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGG < 1:3902073/91‑1 TTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGG > 2:1050984/1‑91 TTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGG > 1:864957/1‑91 TTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGG < 1:2289695/91‑1 TTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGG > 2:2444256/1‑91 TTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGG > 1:179996/1‑91 TCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGC < 2:180487/91‑1 TCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTCATTGGC < 1:3069569/91‑1 CAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCT > 1:2233195/1‑91 AGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGCGTGTTGAAGTCAACATTTCCCATTGATTGGCTT > 1:2157365/1‑91 AGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTT > 2:1569713/1‑91 AGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTT > 2:2423282/1‑91 AGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTT > 2:2316648/1‑91 AGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTT > 1:226619/1‑91 GTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTT > 1:1561264/1‑91 GTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGCGTTGAAGTCAACATTTCCCATTGATTGGCTTT > 1:1236711/1‑91 TTGCTGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTA > 2:1085990/1‑91 TTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTA > 1:3520706/1‑91 TTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTA < 1:1141343/91‑1 TTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTA < 1:1141312/91‑1 TTAGTAACACAGTATAAAAGCCAATCAAACGCAGTGTTGAAGTCAACATTTCCCATTCATTGGCTTTTATACTGTGTTACTAAGTTATGAA > 1:3508747/1‑91 AAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACT > 2:1665649/1‑91 GCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGA > 1:1120394/1‑91 GCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGA > 1:1119959/1‑91 GCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGA > 1:1120016/1‑91 CCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAA > 1:3877603/1‑91 CAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGCTTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAA > 1:1814843/1‑91 ATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAA > 1:360402/1‑91 ATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAA > 2:2700557/1‑91 TCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAA > 2:1727639/1‑91 CAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAA > 1:1373484/1‑91 CAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAA > 2:470574/1‑91 CAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAA > 2:3484954/1‑91 AAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAG > 1:3763656/1‑91 AAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAG > 1:3763594/1‑91 AAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAG > 2:2487255/1‑91 AAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAG > 1:9241/1‑91 AAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAG > 1:2013500/1‑91 TTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTA > 1:445427/1‑91 TGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAA > 1:983108/1‑91 TGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAA < 2:3624381/91‑1 TGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAA < 1:1480464/91‑1 TGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAA < 1:657573/91‑1 TGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAA < 1:657539/91‑1 GATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAAT < 2:2502594/91‑1 GATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAAT < 2:2495630/91‑1 GATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAAT > 1:2710712/1‑91 GATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAAAGAAAAAAAAAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAAT < 2:2495877/91‑1 ATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATA < 1:1499203/91‑1 ATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATA < 2:2827300/91‑1 ATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATA < 2:161621/91‑1 TTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAA > 2:3268450/1‑91 TTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAA > 1:1890242/1‑91 TTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAA > 2:1200417/1‑91 TTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAA > 2:2778556/1‑91 TTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACAGCAAACTGAAAAAAAGCAATATAATACTA‑TTTAATACGATTAGTAATAA > 2:3001977/1‑91 TGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAA < 1:911164/91‑1 GGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAAT > 1:3476598/1‑91 GGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAAT > 1:771766/1‑91 GCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATG > 1:592566/1‑91 GCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATG > 1:593922/1‑91 GCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATG < 2:2963150/91‑1 GCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAAAAAAAAAAAAAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATG < 2:511901/91‑1 CTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATGT > 2:2593954/1‑91 CTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATGT > 2:2220086/1‑91 TTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATGTAA < 1:1771819/91‑1 TTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATGTAA < 1:3769191/91‑1 TTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATGTAAT < 1:1816168/91‑1 TTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATGTAAT < 1:2227232/91‑1 TTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATGTAAT < 1:3229268/91‑1 TTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATGTAAT > 1:689564/1‑91 TTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATGTAAT > 2:1209617/1‑91 TTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATGTAAT > 2:1120174/1‑91 TATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTTAATACGATTAGTAATAAATGTAAT < 1:1356707/91‑1 TATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATGTAATT < 2:3064656/91‑1 ATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATGTAATTG < 2:2780756/91‑1 ATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATGTAATTG < 1:1714026/91‑1 GCTTTTTTTCAGTTTGCCGTTGTTACTTTCATAACTTAGTAACACAGTATAAAAGCCAATCAAACGGAGTGTTGAAGTCAACATTTCCCATTGATTGGCTTTTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < USA300TCH1516_ALE/1040460‑1040357‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATA‑TTTAATACGATTAGTAATAAATGTAATTG > USA300TCH1516_ALE/1040412‑1040501 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |