| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 1040357 = | 197 (0.970) | 19 (0.110) | 9/132 | NT | 10.5% | intergenic (+18/+70) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein |
| ? | USA300TCH1516_ALE | 1040412 = | 161 (0.960) | intergenic (+73/+15) | USA300TCH1516_00966/USA300TCH1516_00967 | putative ABC transporter ATP‑binding protein/hypothetical protein | |||||
Only 100 of 303 total aligned reads displayed.
AAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGA > USA300TCH1516_ALE/1040322‑1040502 | aaaGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTtat < 1:3396953/91‑1 (MQ=255)aaaGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTtat < 1:3850196/91‑1 (MQ=255) aGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATAc < 1:3765057/91‑1 (MQ=255) aGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACtgt > 1:3606609/1‑91 (MQ=255) gCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACtgtg < 2:3890899/91‑1 (MQ=255) aTCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGtt > 2:2909233/1‑91 (MQ=255) tCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTa < 1:2700010/91‑1 (MQ=255) tCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTa < 1:2101414/91‑1 (MQ=255) tATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACt < 2:1180443/91‑1 (MQ=255) aTGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTa > 2:3727125/1‑91 (MQ=255) aTGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTa > 1:1950679/1‑91 (MQ=255) tgtgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTaa > 2:1747162/1‑91 (MQ=255) tgtgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTaa > 2:1683691/1‑91 (MQ=255) tgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGt > 2:1123510/1‑91 (MQ=255) tgATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGt > 1:2201051/1‑91 (MQ=255) gATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGCAATGTTGACTTCACCACTCCGTTTGATAGGCTTTTATACTGTGTTACTAAGtt > 1:3681989/1‑91 (MQ=255) gATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGtt > 2:518765/1‑91 (MQ=255) atatCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTa < 2:2153066/91‑1 (MQ=255) atatCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTa > 2:1857083/1‑91 (MQ=255) atatCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTa < 1:2419614/91‑1 (MQ=255) tatCCAAAAGATAAGGTTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTAt < 1:936190/91‑1 (MQ=255) atCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATg > 1:2639680/1‑91 (MQ=255) tCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGa > 1:3905206/1‑91 (MQ=255) tCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGa > 2:508260/1‑91 (MQ=255) tCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGa > 1:707301/1‑91 (MQ=255) tCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGa < 2:1056744/91‑1 (MQ=255) ttagtaacacagtataaaagccaatcaaacgcagtgttgaagtcaacatttcccattcattggcttttaTACTGTGTTACTAAGTTATGaa > 1:3508747‑M2/70‑91 (MQ=255) aaaaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAg < 2:2510786/91‑1 (MQ=255) aaaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGt < 1:876914/91‑1 (MQ=255) aaaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGt < 1:3717747/91‑1 (MQ=255) aaGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTa > 1:1457450/1‑91 (MQ=255) aaGATAAAAGTGAAAGCCAAGCAATGGGAAAGGTTGACTTCAACACTCCGTTTGATTGGCTGTTATACTGTGTTACTAAGTTATGAAAGTa < 2:1119975/91‑1 (MQ=255) aGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaa > 1:795786/1‑91 (MQ=255) gATAGAATTAAAAGCCAATCACTGGGAAATGTTGGCTTCAACACTCTGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGttta < 2:1415337/91‑4 (MQ=255) gATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaac < 1:2388139/91‑1 (MQ=255) gATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaac < 1:1144952/91‑1 (MQ=255) aTAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaaca < 1:600808/91‑1 (MQ=255) aTAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTaaca < 2:787917/91‑1 (MQ=255) aaTTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACgg > 2:1810060/1‑91 (MQ=255) aaTTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTATGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACgg < 1:3145689/91‑1 (MQ=255) aTTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGc > 1:1413779/1‑91 (MQ=255) aagccaatcaaacggagtgttgaagtcaacatttcccattgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACt > 2:1665649‑M2/53‑91 (MQ=255) AAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACt > 2:2316648‑M1/1‑91 (MQ=255) gccaatcaaacggagtgttgaagtcaacatttcccattgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGa > 1:1120394‑M2/51‑91 (MQ=255) gccaatcaaacggagtgttgaagtcaacatttcccattgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGa > 1:1800124‑M2/51‑91 (MQ=255) GCCAATGAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGa < 1:3069569‑M1/91‑1 (MQ=255) GCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGa < 2:180487‑M1/91‑1 (MQ=255) CCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaa < 1:2289695‑M1/91‑1 (MQ=255) CCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaa > 2:2444256‑M1/1‑91 (MQ=255) CCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaa < 1:3902073‑M1/91‑1 (MQ=255) CAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaaa < 2:1497481‑M1/91‑1 (MQ=255) CAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaaa > 2:1448990‑M1/1‑91 (MQ=255) AATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaaaa > 1:2227072‑M1/1‑91 (MQ=255) atcaaacggagtgttgaagtcaacatttcccattgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaaaaa > 2:2700557‑M2/47‑91 (MQ=255) ATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaaaaa < 1:1902897‑M1/91‑1 (MQ=255) ATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaaaaa < 1:246888‑M1/91‑1 (MQ=255) caaacggagtgttgaagtcaacatttcccattgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaaaaaaa > 2:3484954‑M2/45‑91 (MQ=255) caaacggagtgttgaagtcaacatttcccattgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaaaaaaa > 2:470574‑M2/45‑91 (MQ=255) CAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaaaaaaa > 1:3622997‑M1/1‑91 (MQ=255) CAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGaaaaaaa > 1:2336632‑M1/1‑91 (MQ=255) aaacggagtgttgaagtcaacatttcccattgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAg > 1:3763594‑M2/44‑91 (MQ=255) AATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAg < 1:2342379‑M1/91‑1 (MQ=255) ATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGc > 1:3549881‑M1/1‑91 (MQ=255) ATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGc < 1:2243552‑M1/91‑1 (MQ=255) gggAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCaa < 2:1338556/91‑1 (MQ=255) gAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAata < 1:3773161/91‑1 (MQ=255) gAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAata > 1:1042657/1‑91 (MQ=255) aaaTGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAatat > 1:289376/1‑91 (MQ=255) aaaTGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAatat > 1:2960649/1‑91 (MQ=255) aTGTTAATTTCAACACTCCATTTGATTGGCTTTTATAATGCGTTGCTATGTTATGAAAGTAATAACGGCAAACTGAAAAAAAGCAATataa > 2:2638048/1‑91 (MQ=255) tGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATataat > 1:203116/1‑91 (MQ=255) ttGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATataataa > 1:2429002/1‑91 (MQ=255) gACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATataataata > 1:1769878/1‑91 (MQ=255) aCTTCAATACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAatat < 1:1960616/91‑1 (MQ=255) cAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTaa < 2:888261/91‑1 (MQ=255) cAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTaa < 1:2922239/91‑1 (MQ=255) acacTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATa > 1:3450264/1‑91 (MQ=255) cacTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATAc > 1:279856/1‑91 (MQ=255) cTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGa > 1:1598280/1‑91 (MQ=255) tCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGAt > 2:1542207/1‑91 (MQ=255) tCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGAt < 2:3106351/91‑1 (MQ=255) ccGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGAtt > 1:554080/1‑91 (MQ=255) ccGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAACTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGAtt > 1:3419394/1‑91 (MQ=255) cGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTa < 1:135009/91‑1 (MQ=255) ttgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGta > 1:445427‑M2/15‑91 (MQ=255) tgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGtaa < 1:657539‑M2/78‑1 (MQ=255) tgattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGtaa < 2:3624381‑M2/78‑1 (MQ=255) gattggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAAAGAAAAAAAAAAAAAAAGCAATATAATAATATTTAATACGATTAGtaat < 2:2495877‑M2/79‑1 (MQ=255) attggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGtaata < 2:2827300‑M2/80‑1 (MQ=255) attggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGtaata < 1:1499203‑M2/80‑1 (MQ=255) ttggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACAGCAAACTGAAAAAAAGCAATATAATACTATTTAATACGATTAGtaataa > 2:3001977‑M2/11‑91 (MQ=255) tggcttttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATaaa < 1:911164‑M2/82‑1 (MQ=255) tttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTaa < 1:2564195‑M2/87‑1 (MQ=255) ttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAAt > 2:1209617‑M2/4‑91 (MQ=255) ttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAAt < 1:3229268‑M2/88‑1 (MQ=255) ttaTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAAt < 1:1816168‑M2/88‑1 (MQ=255) ttATACTGTGTTACTAAGTTACGAAAGTAACAACGGCAAACTGAAACAAAGCAATATAACAATATTCAATACGATTAGTAATAACTGTaac > 2:3317020/1‑90 (MQ=255) aTACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTg < 1:1714026‑M2/90‑1 (MQ=255) taCTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGa > 1:2154297/1‑91 (MQ=255) taCTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGa > 2:160618/1‑91 (MQ=255) | AAAGTAGCATCTATGTGATATCCAAAAGATAAAATTAAAAGCCAATCAATGGGAAATGTTGACTTCAACACTCCGTTTGATTGGCTTTTATACTGTGTTACTAAGTTATGAAAGTAACAACGGCAAACTGAAAAAAAGCAATATAATAATATTTAATACGATTAGTAATAAATGTAATTGA > USA300TCH1516_ALE/1040322‑1040502 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |