| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1262909 | 166 (0.810) | 30 (0.170) | 13/140 | NT | 16.3% | intergenic (+34/‑193) | sucD/lytN_1 | Succinate‑‑CoA ligase [ADP‑forming] subunit alpha/putative cell wall hydrolase LytN |
| ? | USA300TCH1516_ALE | = 1262932 | 162 (0.910) | intergenic (+57/‑170) | sucD/lytN_1 | Succinate‑‑CoA ligase [ADP‑forming] subunit alpha/putative cell wall hydrolase LytN | |||||
Only 100 of 308 total aligned reads displayed.
TGAAGCTGCTAAAGAAGCAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTAT > USA300TCH1516_ALE/1262821‑1262999 | tGAAGCTGCTAAAGAAGCAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑cc < 2:2171466/91‑1 (MQ=255) aGCTGCTAAAGAAGCAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATa < 1:581049/91‑1 (MQ=255) gctgctAAAGAAGCAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAc < 1:3171838/91‑1 (MQ=255) gctgctAAAGAAGCAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAc < 1:1234235/91‑1 (MQ=255) ctAAAGAAGCAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTta > 2:1153838/1‑91 (MQ=255) tAAAGAAGCAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTtat < 1:2725208/91‑1 (MQ=255) tAAAGAAGCAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTtat < 1:472095/91‑1 (MQ=255) aagaagCAGGTATTTATGAATCATTATTAACAGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTtccgatactttta < 2:2904543‑M1/91‑14 (MQ=255) agaagCAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTtccgatacttttat < 1:3590547‑M1/91‑15 (MQ=255) gaagCAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATACTTTTATaaa < 1:3372012/91‑1 (MQ=255) aagCAGGTATTTAAGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGCTGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAg > 2:3688347/1‑91 (MQ=255) agCAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGt < 2:1889082/91‑1 (MQ=255) agCAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGt < 1:1762378/91‑1 (MQ=255) gtaaaataattaacttgtctttccaaaatatgaaaagtgtactaaaattcatcgcacgacaaATAGCCCATT‑CCATAC‑TTTATAAAAGTAt > 2:590533‑M1/63‑91 (MQ=255) gtaaaataattaacttgtctttccaaaatatgaaaagtgtactaaaattcatcgcacgacaaATAGCCCATT‑CCATAC‑TTTATAAAAGTAt > 2:254797‑M1/63‑91 (MQ=255) cAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTtccgatacttttataaagt < 1:3688890‑M1/91‑20 (MQ=255) cAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTtccgatacttttataaagt < 1:3097273‑M1/91‑20 (MQ=255) cAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTtccgatacttttataaagt < 2:1405734‑M1/91‑20 (MQ=255) cAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTAt > 2:2728804/1‑91 (MQ=255) cAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTAt < 1:2883323/91‑1 (MQ=255) cAGGTATTTAGGAAGCATTATTAACTGGGAATAAAGAAAGTTAAAAGAGCATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTAt < 1:3424868/91‑1 (MQ=255) taaaataattaacttgtctttccaaaatatgaaaagtgtactaaaattcatcgcacgacaaATAGCCCATTTCCATAC‑TTTATAAAAGTAt > 1:3440576‑M1/62‑91 (MQ=255) taaaataattaacttgtctttccaaaatatgaaaagtgtactaaaattcatcgcacgacaaATAGCCCATT‑CCATAC‑TTTATAAAAGTATc > 1:2065424‑M1/62‑91 (MQ=255) taaaataattaacttgtctttccaaaatatgaaaagtgtactaaaattcatcgcacgacaaATAGCCCATT‑CCATAC‑TTTATAAAAGTATc > 2:3100872‑M1/62‑91 (MQ=255) taaaataattaacttgtctttccaaaatatgaaaagtgtactaaaattcatcgcacgacaaATAGCCCATT‑CCATAC‑TTTATAAAAGTATc > 1:235193‑M1/62‑91 (MQ=255) taaaataattaacttgtctttccaaaatatgaaaagtgtactaaaattcatcgcacgacaaATAGCCCATT‑CCATAC‑TTTATAAAAGTATc > 2:3414845‑M1/62‑91 (MQ=255) aGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTtccgatacttttataaagta < 1:1033553‑M1/91‑21 (MQ=255) aGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTtccgatacttttataaagta < 1:2316786‑M1/91‑21 (MQ=255) ggTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTtccgatacttttataaagtat < 2:1316155‑M1/91‑22 (MQ=255) ggTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCg > 1:3766563/1‑91 (MQ=255) aaaataattaacttgtctttccaaaatatgaaaagtgtactaaaattcatcgcacgacaaATAGCCCATT‑CCATAC‑TTTATAAAAGTATCg > 1:54154‑M1/61‑91 (MQ=255) ataattaacttgtctttccaaaatatgaaaagtgtactaaaattcatcgcacgacaaATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGaa > 2:2647102‑M1/58‑91 (MQ=255) tttATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTtccgatacttttataaagtatggaa < 1:1485806‑M1/91‑26 (MQ=255) tttATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTtccgatacttttataaagtatggaa < 2:199275‑M1/91‑26 (MQ=255) taattaacttgtctttccaaaatatgaaaagtgtactaaaattcatcgcacgacaaATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGaaa > 1:980210‑M1/57‑91 (MQ=255) ttATGAATGATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATTtccgatacttttataaagtatggaat < 2:3073661‑M1/91‑27 (MQ=255) tATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAaatg > 2:2682168‑M2/1‑87 (MQ=255) aTGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAaatgg < 2:2203768‑M2/91‑6 (MQ=255) tGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAaatggg > 1:1287769‑M2/1‑85 (MQ=255) tGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCAATAGCCCATTtccgatacttttataaagtatggaatggg < 1:3412306‑M1/91‑30 (MQ=255) ctttattaACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTAtt < 2:1352112/89‑1 (MQ=255) cATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATAGGAAATGGGCTAtt > 2:1118350/1‑91 (MQ=255) attattAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTAttt < 1:1048511/91‑1 (MQ=255) tattaACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGt > 1:1148527/1‑91 (MQ=255) attaACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTc > 2:3959522/1‑91 (MQ=255) ttaACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCg > 2:1345801/1‑91 (MQ=255) taACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGt > 1:2550515/1‑91 (MQ=255) aaCTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTg > 2:2486098/1‑91 (MQ=255) cTGTTAATAAATAAAGTTAAAAGATGATACAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTCGTCGTGCg > 2:3445314/1‑91 (MQ=255) gTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGAt > 1:2681494/1‑91 (MQ=255) gTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGAt < 1:1114238/91‑1 (MQ=255) taataaATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGa > 1:297226/1‑91 (MQ=255) taataaATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGa > 2:2352378/1‑91 (MQ=255) taataaATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGa < 2:3811382/91‑1 (MQ=255) aactaaatgaagttAAAAGATGATATAAATGGCTAAAGCCCATTaccgatacttttataaagtatggaatgggctatagccatttatatca < 2:1706309‑M1/88‑48 (MQ=255) taaataaaGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAAtt < 2:653661/91‑1 (MQ=255) taaataaaGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAAtt > 2:772803/1‑91 (MQ=255) gTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATTC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTaca > 2:3732221/1‑91 (MQ=255) gTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTaca > 1:3526822/1‑91 (MQ=255) ttAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTacac > 1:867066/1‑91 (MQ=255) aaaGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACttt > 1:3270030/1‑91 (MQ=255) aaaGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACttt > 2:1735846/1‑91 (MQ=255) aaGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACtttt < 1:385379/91‑1 (MQ=255) aaGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACtttt > 1:708181/1‑91 (MQ=255) aaGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACtttt < 1:3802816/91‑1 (MQ=255) aaGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACtttt < 2:1823797/91‑1 (MQ=255) aGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTc > 2:1616213/1‑91 (MQ=255) aGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTc > 2:2323084/1‑91 (MQ=255) gatgatATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCa < 1:2177274/91‑1 (MQ=255) tgatATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGACATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCata > 2:495899/1‑91 (MQ=255) tgatATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCata > 1:363268/1‑91 (MQ=255) tgatATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCata > 2:419240/1‑91 (MQ=255) gatATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCatat > 1:2252569/1‑91 (MQ=255) taAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTg < 2:335368/91‑1 (MQ=255) aaTGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGa > 2:3618663/1‑91 (MQ=255) tGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGaaa < 1:2425557/91‑1 (MQ=255) ggCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAg < 2:3224484/91‑1 (MQ=255) gCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGa < 1:3034795/91‑1 (MQ=255) gCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGa > 2:208182/1‑91 (MQ=255) cTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAaatgggctatagccatttatatcatcttttaactttatttattaacagttaataat < 1:1570914‑M2/91‑57 (MQ=255) tataGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACa > 2:2967040/1‑91 (MQ=255) ataGCCCATTtccgatacttttataaagtatggaatgggctatagccatttatatcatcttttaactttatttattaacagttaataatga > 1:917742‑M1/1‑10 (MQ=255) ataGCCCATTtccgatacttttataaagtatggaatgggctatagccatttatatcatcttttaactttatttattaacagttaataatga < 2:2298038‑M1/91‑82 (MQ=255) ATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACaa < 1:1794726‑M1/91‑1 (MQ=255) TAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAg < 2:2377314‑M1/91‑1 (MQ=255) aGCCCATTtccgatacttttataaagtatggaatgggctatagccatttatatcatcttttaactttatttattaacagttaataatgatt < 1:355481‑M1/91‑84 (MQ=255) AGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGt > 1:814946‑M1/1‑91 (MQ=255) GCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGtt > 2:8508‑M1/1‑91 (MQ=255) GCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGtt < 2:1079915‑M1/91‑1 (MQ=255) GCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGtt > 1:779116‑M1/1‑91 (MQ=255) CCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTaa > 2:941907‑M1/1‑91 (MQ=255) cATTtccgatacttttataaagtatggaatgggctatagccatttatatcatcttttaactttatttattaacagttaataatgattcata > 2:2682588‑M1/1‑4 (MQ=255) cATT‑CCATAC‑TTTATAAAAGTATCGGAaatgggctctagccatttatatcatcttttcactttatttattaccagctaataatgattcatc < 2:2492078‑M2/91‑65 (MQ=255) CATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAat < 1:2820125‑M1/91‑1 (MQ=255) aTT‑CCATAC‑TTTATAAAAGTATCGGAaatgggctatagccatttatatcatcttttaactttatttattaacagttaataatgattcataa < 1:477064‑M2/91‑66 (MQ=255) aTT‑CCATAC‑TTTATAAAAGTATCGGAaatgggctatagccatttatatcatcttttaactttatttattaacagttaataatgattcataa < 1:1861298‑M2/91‑66 (MQ=255) ATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAatt < 1:1825227‑M1/91‑1 (MQ=255) TT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAatta < 1:140134‑M1/91‑1 (MQ=255) T‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAattat < 1:137771‑M1/91‑1 (MQ=255) T‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAattat < 2:2754480‑M1/91‑1 (MQ=255) | TGAAGCTGCTAAAGAAGCAGGTATTTATGAATCATTATTAACTGTTAATAAATAAAGTTAAAAGATGATATAAATGGCTATAGCCCATT‑CCATAC‑TTTATAAAAGTATCGGAAATGGGCTATTTGTCGTGCGATGAATTTTAGTACACTTTTCATATTTTGGAAAGACAAGTTAATTAT > USA300TCH1516_ALE/1262821‑1262999 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |