BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1353906	177 (0.870)	9 (0.050)	7/134	NT	5.6%	intergenic (+99/+44)	nucH/USA300HOU_RS06735	Thermonuclease/hypothetical protein
*	?	USA300TCH1516_ALE	= 1353932	154 (0.900)	9 (0.050)	7/134	NT	5.6%	intergenic (+125/+18)	nucH/USA300HOU_RS06735	Thermonuclease/hypothetical protein

Only 100 of 333 total aligned reads displayed.

GTGATTATATATATTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAG  >  USA300TCH1516_ALE/1353816‑1353996

gcgaagccatagagctatctaaacaccctttaaataaagaacaggttgatcaaatcacagctatattcaagtaaaatcAAAGGCAtaataa                                                                                            <  2:562635‑M1/13‑1 (MQ=255)

gTGATTATATATATTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAA                                                                                            <  2:1113031‑M1/91‑1 (MQ=255)

gTGATTATATATATTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAA                                                                                            <  1:3840697‑M1/91‑1 (MQ=255)

gTGATTATATATATTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAA                                                                                            <  2:1315856‑M1/91‑1 (MQ=255)

gTGAGTATATATATTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAA                                                                                            <  1:3296371‑M1/91‑1 (MQ=255)

   aagccatagatctatctaaacaccctgtaaataaagaacaggttgatcaaatcacagctatattcaagtaaaatcAAAGgcataataagcc                                                                                         >  2:3675470‑M1/76‑88 (MQ=255)

   aTTATATATATTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCa                                                                                         >  1:2472375/1‑91 (MQ=255)

    ttATATATATTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCAt                                                                                        <  2:1512988/91‑1 (MQ=255)

     tatatataTTAACGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATa                                                                                       <  2:3282872/91‑1 (MQ=255)

     tatatataTTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATa                                                                                       <  2:395303/91‑1 (MQ=255)

       tatatatTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGt                                                                                     <  1:3706767/91‑1 (MQ=255)

       tatatatTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGt                                                                                     <  1:367268/91‑1 (MQ=255)

       tatatatTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGt                                                                                     >  2:3036637/1‑91 (MQ=255)

        atatatTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTg                                                                                    >  1:652834/1‑91 (MQ=255)

         tatatTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGc                                                                                   <  1:2054394/91‑1 (MQ=255)

         tatatTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGc                                                                                   <  1:610074/91‑1 (MQ=255)

         tatatTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGc                                                                                   >  2:889032/1‑91 (MQ=255)

          atatTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCg                                                                                  >  1:1530760/1‑91 (MQ=255)

           tatTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGt                                                                                 >  2:1181270/1‑91 (MQ=255)

           tatTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGt                                                                                 >  1:265850/1‑91 (MQ=255)

             ttAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTAt                                                                               >  1:1284479/1‑91 (MQ=255)

              tAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATc                                                                              <  2:1857017/91‑1 (MQ=255)

              tAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATc                                                                              <  2:3134967/91‑1 (MQ=255)

              tAAAGTAAAATATACATGGTGCTTTGATTTATTAATATCATAAATTTATATATAGAAATAATTTAAAGGTATAATAACCATAGTGCGTATc                                                                              <  2:429532/91‑1 (MQ=255)

               ataGTAAAATATACTTGAAGCATCGATTGATGATTACCATATATTTAGATATAGAAATAATTTAAATGCATAATAACCATAGTGCGTATCg                                                                             <  2:833208/89‑1 (MQ=255)

               aaaGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGTCATAATAACCATAGTGCGGATCg                                                                             <  1:3127889/91‑1 (MQ=255)

               aaaGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCg                                                                             <  2:874345/91‑1 (MQ=255)

                 aGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAg                                                                           >  2:3498689/1‑91 (MQ=255)

                    aaaaTATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAAtccattacgctcgatacgca                                                                        <  2:2154139‑M1/91‑21 (MQ=255)

                    aaaaTATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGt                                                                        <  1:214502/91‑1 (MQ=255)

                    aaaaTATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAAGAATTTAAAGGCATAATAAtccattacgctcgatacgca                                                                        <  1:1157022‑M1/91‑21 (MQ=255)

                      aaTATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTaa                                                                      <  1:2387750/91‑1 (MQ=255)

                        tataCTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATg                                                                    >  1:2595248/1‑91 (MQ=255)

                         ataCTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAAtccattacgctcgatacgcactatg                                                                   <  1:3484320‑M1/91‑26 (MQ=255)

                         ataCTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATgg                                                                   <  1:1714782/91‑1 (MQ=255)

                         ataCTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATgg                                                                   <  1:984131/91‑1 (MQ=255)

                         ataCTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATgg                                                                   >  1:2990843/1‑91 (MQ=255)

                           aCTTGGAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAt                                                                 >  2:3198323‑M2/1‑90 (MQ=255)

                              taaataaagaacaggttgatcaaatcacagctatattcaagtaaaatcAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGattat                                                              >  1:184804‑M1/49‑91 (MQ=255)

                              taaataaagaacaggttgatcaaatcacagctatattcaagtaaaatcAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGattat                                                              >  2:2493392‑M1/49‑91 (MQ=255)

                              tGAATCATCGATTTATTATTTCCAGATATTTATATATAGAAATAATTTAAAATCATAATAAtccattacgctcgatacgcactatggttat                                                              <  2:2559410‑M1/91‑31 (MQ=255)

                                aaGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttatta                                                            >  2:1144075‑M2/1‑85 (MQ=255)

                                     tCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcct                                                       <  1:3074543‑M2/91‑12 (MQ=255)

                                     tCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcct                                                       <  2:658990‑M2/91‑12 (MQ=255)

                                      cGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcctt                                                      <  1:1582317‑M2/91‑13 (MQ=255)

                                       gATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgccttt                                                     >  2:1129421‑M2/1‑78 (MQ=255)

                                        aTTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTg                                                    >  2:2067187/1‑91 (MQ=255)

                                         tttATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGa                                                   >  2:1392365/1‑91 (MQ=255)

                                          ttattattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAt                                                  <  2:3633540/91‑1 (MQ=255)

                                          ttattattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAt                                                  <  1:1798625/91‑1 (MQ=255)

                                           tattattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAtt                                                 <  2:3901635/91‑1 (MQ=255)

                                             ttattaCCATAAATTTATATTTAGAAATAATTTAAAGGCATAATAATCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAtttt                                               >  2:1911929/1‑91 (MQ=255)

                                             ttattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAtttt                                               >  1:2073271/1‑91 (MQ=255)

                                             ttagtaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAtttt                                               <  1:3195876/91‑1 (MQ=255)

                                               attaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTAc                                             <  2:2913412/91‑1 (MQ=255)

                                               attaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTAc                                             <  1:924937/91‑1 (MQ=255)

                                                ttaCCATAAATTTATATATAGAATTATTTTAAAGGCATCATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACt                                            <  2:1420661/91‑1 (MQ=255)

                                                 taCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACtt                                           >  1:1018804/1‑91 (MQ=255)

                                                    cATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGaa                                        <  1:1110843/91‑1 (MQ=255)

                                                      tAAATTTATATATGGAAATAATTTAAAGGCATAATAACCATAGGGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAata                                      <  1:3954284/91‑1 (MQ=255)

                                                      tAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAata                                      <  2:607217/91‑1 (MQ=255)

                                                       aaaTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAatat                                     <  2:104344/91‑1 (MQ=255)

                                                         aTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAg                                   <  1:2799671/91‑1 (MQ=255)

                                                           ttATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCt                                 >  1:745128/1‑91 (MQ=255)

                                                            tatatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtg                                >  1:2681198/1‑91 (MQ=255)

                                                            tatatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtg                                >  1:3615457/1‑91 (MQ=255)

                                                             atatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtgt                               >  2:207946/1‑91 (MQ=255)

                                                             atatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtgt                               >  2:3789409/1‑91 (MQ=255)

                                                             atatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAACGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtgt                               >  2:3552112/1‑91 (MQ=255)

                                                                tataGAAATAATGTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGAt                            <  1:145227/91‑1 (MQ=255)

                                                                   aGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTg                         <  2:1645545/91‑1 (MQ=255)

                                                                    gAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGa                        >  2:412872/1‑91 (MQ=255)

                                                                      aataatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATc                      <  1:1251029/91‑1 (MQ=255)

                                                                      aataatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATc                      >  2:2216750/1‑91 (MQ=255)

                                                                       ataatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCa                     <  2:2769031/91‑1 (MQ=255)

                                                                          atTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAcc                  <  1:509004/91‑1 (MQ=255)

                                                                            ttAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTg                <  2:3851998/91‑1 (MQ=255)

                                                                            ttAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTg                >  2:51228/1‑91 (MQ=255)

                                                                              AAAGGCATAATAACCATAGTGCGTATCTAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGtt              <  1:2560667‑M1/91‑1 (MQ=255)

                                                                              AAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGtt              <  2:709865‑M1/91‑1 (MQ=255)

                                                                               aaGGCATAATAAtccattatgctcgatacgcactatggttattatgcctttaaattatttctatatataaatttatggtaataataaatcg             >  2:1802549‑M1/1‑12 (MQ=255)

                                                                               aaGGCATAATAAtccattacgctcgatacgcactatggttattatgcctttaaattatttctatatataaatttatggtaataataaatcg             >  2:2599180‑M1/1‑12 (MQ=255)

                                                                               AAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTc             <  1:2248913‑M1/91‑1 (MQ=255)

                                                                                aGGCATAATAAtccattacgctcgatacgccctattgttactatgcctttacctctttcctatatataaatttatggtaataataaatcga            >  2:1972961‑M1/1‑11 (MQ=255)

                                                                                aGGCATAATAAtccattacgctcgatacgcactatggttattatgcctttaaattatttctatatataaatttatggtaataataaatcga            >  2:2044826‑M1/1‑11 (MQ=255)

                                                                                aGGCATAATAAtccattacgctcgatacgcactatggttattatgcctttaaattatttctatatataaattgatggtaataataaatcga            >  1:2826789‑M1/1‑11 (MQ=255)

                                                                                 GGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtt           >  2:1895326‑M1/1‑91 (MQ=255)

                                                                                 GGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTATGATTTCACTTGAATATAGCTGTGATTTGATCAACCTGTTctc           <  2:3908850‑M1/91‑2 (MQ=255)

                                                                                  gCATAATAAtccattacgctcgatacgcactatggttattatgcctttaaattatttctatatataaatttatggtaataataaatcgatg          >  1:1964579‑M1/1‑9 (MQ=255)

                                                                                  gCATAATAAtccattacgctcgatacgcactatggttattatgcctttaaattatttctatatataaatttatggtaataataaatcgatc          >  2:3096782‑M1/1‑9 (MQ=255)

                                                                                   cATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcctttaaattatttctatatataaatttatggtaataataaatcgatgc         <  2:3613936‑M2/91‑58 (MQ=255)

                                                                                    ATAATAACCATAGTGCGTATCGAGCGTAATGGTTTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttat        >  1:3371400‑M1/1‑91 (MQ=255)

                                                                                      aataatccattacgctcgatacgcactatggttattatgcctttaaattatttctatatataaatttatggtaataataaatcgatgcttc      <  1:617595‑M1/91‑87 (MQ=255)

                                                                                      AATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattt      >  2:1703742‑M1/1‑91 (MQ=255)

                                                                                       ataatccattacgctcgatacgcactatggttattatgcctttaaattatttctatatataaatttatggtaataataaatcgatgcttca     <  1:633627‑M1/91‑88 (MQ=255)

                                                                                       ataatccattacgctcgatacgcactatggttattatgcctttaaattatttctatatataaatttatggtaataataaatcgatgcttca     <  1:1126799‑M1/91‑88 (MQ=255)

                                                                                       ataaCCATAGTGCGTATCGAGCGTAATGGAttattatgcctttaaattatttctatatataaatttatggtaataataaatcgatgcttca     <  2:1994602‑M2/91‑62 (MQ=255)

                                                                                       ATAACCATAGGGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattta     >  1:1563100‑M1/1‑91 (MQ=255)

                                                                                         aatccattacgctcgatacgcactatggttattatgcctttaaattatttctatatataaatttatggtaataataaatcgatgcttcaag   <  1:1367216‑M1/91‑90 (MQ=255)

                                                                                          aCCATAGTGCGTATCGAGCGTAATGGAttattatgcctttaaattacttctatatataaatctatggtagtaataaatcgatgcgtcaagt  <  2:2209130‑M2/91‑65 (MQ=255)

GTGATTATATATATTAAAGTAAAATATACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAG  >  USA300TCH1516_ALE/1353816‑1353996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.