BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1353906	177 (0.870)	9 (0.050)	7/134	NT	5.6%	intergenic (+99/+44)	nucH/USA300HOU_RS06735	Thermonuclease/hypothetical protein
*	?	USA300TCH1516_ALE	= 1353932	154 (0.900)	9 (0.050)	7/134	NT	5.6%	intergenic (+125/+18)	nucH/USA300HOU_RS06735	Thermonuclease/hypothetical protein

Only 100 of 282 total aligned reads displayed.

ACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCG  >  USA300TCH1516_ALE/1353843‑1354022

aCTTGGAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAt                                                                                           >  2:3198323‑M2/1‑90 (MQ=255)

 cTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAtt                                                                                          >  2:1965367‑M2/1‑89 (MQ=255)

 cTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAtt                                                                                          <  1:1564099‑M2/91‑3 (MQ=255)

 cTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAtt                                                                                          <  1:1367216‑M2/91‑3 (MQ=255)

  ttGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAtta                                                                                         >  2:2117618‑M2/1‑88 (MQ=255)

   taaataaagaacaggttgatcaaatcacagctatattcaagtaaaatcAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGattat                                                                                        >  1:2519186‑M1/49‑91 (MQ=255)

   tGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttat                                                                                        <  1:633782‑M2/91‑5 (MQ=255)

    gAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttatt                                                                                       <  1:617595‑M2/91‑6 (MQ=255)

     aaGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttatta                                                                                      >  2:1144075‑M2/1‑85 (MQ=255)

      aGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattat                                                                                     >  1:3840330‑M2/1‑84 (MQ=255)

        gatCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgc                                                                                   >  2:3096782‑M2/2‑82 (MQ=255)

          tCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcct                                                                                 >  2:2044826‑M2/1‑80 (MQ=255)

          tCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcct                                                                                 <  2:658990‑M2/91‑12 (MQ=255)

           cGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcctt                                                                                >  2:2599180‑M2/1‑79 (MQ=255)

           cGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcctt                                                                                >  2:419000‑M2/1‑79 (MQ=255)

            gATTTATTATTACCATAAATTTATATATAGAGATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgccttt                                                                               >  2:1128679‑M2/1‑78 (MQ=255)

              tttATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGa                                                                             >  2:1392970/1‑91 (MQ=255)

               ttattattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAt                                                                            >  1:2705598/1‑91 (MQ=255)

               ttattattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAt                                                                            <  1:1798625/91‑1 (MQ=255)

                tattattaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAtt                                                                           <  2:3901635/91‑1 (MQ=255)

                  ttagtaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGAtttt                                                                         <  1:3195876/91‑1 (MQ=255)

                    attaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTAc                                                                       <  2:2913412/91‑1 (MQ=255)

                    attaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTAc                                                                       <  1:3086090/91‑1 (MQ=255)

                    attaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTAc                                                                       >  1:3300691/1‑91 (MQ=255)

                    attaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTAc                                                                       <  1:2108919/91‑1 (MQ=255)

                    attaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTAc                                                                       <  1:1249275/91‑1 (MQ=255)

                     ttaCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACt                                                                      <  2:404106/91‑1 (MQ=255)

                      taCCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACtt                                                                     >  1:1018804/1‑91 (MQ=255)

                         cATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGaa                                                                  <  1:1110833/91‑1 (MQ=255)

                           tAAATTTATATATGGAAATAATTTAAAGGCATAATAACCATAGGGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAata                                                                <  1:3954284/91‑1 (MQ=255)

                           tAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAata                                                                <  2:607217/91‑1 (MQ=255)

                            aaaTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAatat                                                               >  2:132190/1‑91 (MQ=255)

                             aaTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAAtata                                                              >  1:111477/1‑91 (MQ=255)

                              gtttATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAg                                                             <  2:3925359/90‑1 (MQ=255)

                              aTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATGGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAg                                                             <  2:3056109/91‑1 (MQ=255)

                              aTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAg                                                             <  1:2799706/91‑1 (MQ=255)

                              aTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAg                                                             >  2:1268858/1‑91 (MQ=255)

                              aTTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAg                                                             <  2:1497935/91‑1 (MQ=255)

                                ttATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCt                                                           <  1:2954264/91‑1 (MQ=255)

                                ttATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCt                                                           >  1:745128/1‑91 (MQ=255)

                                  atatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtgt                                                         >  1:2669670/1‑91 (MQ=255)

                                  atatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtgt                                                         >  2:3789409/1‑91 (MQ=255)

                                  atatataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAACGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtgt                                                         >  2:3552112/1‑91 (MQ=255)

                                  atatataGAAATAATTTAAAGGCATAATAACCATAGTGCGCATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCtgt                                                         >  2:3256464/1‑91 (MQ=255)

                                     tataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGAt                                                      <  1:123268/91‑1 (MQ=255)

                                     tataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGAt                                                      <  1:3568034/91‑1 (MQ=255)

                                     tataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGAt                                                      >  1:1850666/1‑91 (MQ=255)

                                     tataGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGAt                                                      <  2:802404/91‑1 (MQ=255)

                                        aGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTg                                                   <  2:1645545/91‑1 (MQ=255)

                                           aataatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATc                                                >  2:2216750/1‑91 (MQ=255)

                                           aataatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATc                                                <  1:1251029/91‑1 (MQ=255)

                                            ataatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCa                                               <  2:2769527/91‑1 (MQ=255)

                                             taatTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCaa                                              <  2:573270/91‑1 (MQ=255)

                                               atTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAcc                                            <  1:509004/91‑1 (MQ=255)

                                               atTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAcc                                            >  2:2421938/1‑91 (MQ=255)

                                               atTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAAcc                                            <  1:54943/91‑1 (MQ=255)

                                                   cAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGtt                                        <  2:177262‑M1/90‑1 (MQ=255)

                                                   AAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGCTCAACCTGtt                                        <  2:2525381‑M1/91‑1 (MQ=255)

                                                   AAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGtt                                        <  2:709865‑M1/91‑1 (MQ=255)

                                                   AAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGtt                                        <  1:2560801‑M1/91‑1 (MQ=255)

                                                    AAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTc                                       <  1:2248913‑M1/91‑1 (MQ=255)

                                                    AAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTc                                       >  2:875011‑M1/1‑91 (MQ=255)

                                                    AAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTc                                       <  2:2005330‑M1/91‑1 (MQ=255)

                                                    AAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTc                                       >  1:867771‑M1/1‑91 (MQ=255)

                                                     AGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCt                                      <  2:1431811‑M1/91‑1 (MQ=255)

                                                     AGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCt                                      >  1:2056047‑M1/1‑91 (MQ=255)

                                                      GGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtt                                     >  2:1904185‑M1/1‑91 (MQ=255)

                                                      GGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtt                                     >  2:1895326‑M1/1‑91 (MQ=255)

                                                      GGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTAACTTGAATATAGCTGTGATTTGATCAACCTGTTctc                                     <  2:3908488‑M1/91‑2 (MQ=255)

                                                       GCATACTAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCttt                                    >  2:3638316‑M1/1‑91 (MQ=255)

                                                        cATAATAACCATAGTGCGTATCGAGCGTAATGGAttattatgcctttaaattatttctatatataaatttatggtaataataaatcgatgc                                   <  2:3613936‑M2/91‑58 (MQ=255)

                                                         ATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttat                                  <  2:2078251‑M1/91‑1 (MQ=255)

                                                          TAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttatt                                 <  1:1534139‑M1/91‑1 (MQ=255)

                                                          TAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttatt                                 <  1:3675775‑M1/91‑1 (MQ=255)

                                                            ATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCtttattta                               >  2:3658908‑M1/1‑91 (MQ=255)

                                                              AACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTaaa                             >  1:2596454‑M1/1‑91 (MQ=255)

                                                               aCCATAGTGCGTATCGAGCGTAATGGAttattatgcctttaaattacttctatatataaatctatggtagtaataaatcgatgcgtcaagt                            <  2:2209130‑M2/91‑65 (MQ=255)

                                                                ccATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAgg                           >  2:1553819/1‑91 (MQ=255)

                                                                 cATAGTGCGTATCGAGCGTAATGGAttattatgcctttaaattatttctatatataaatttatggtaataataaatcgatgcttcaagtat                          <  1:3484320‑M2/91‑67 (MQ=255)

                                                                 cATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAggg                          <  1:1687222/91‑1 (MQ=255)

                                                                   tAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGgtg                        <  1:1710484/91‑1 (MQ=255)

                                                                    aGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGgtgt                       >  2:949422/1‑91 (MQ=255)

                                                                         gTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGa                  >  1:940570/1‑91 (MQ=255)

                                                                          tATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGAt                 >  1:1051833/1‑91 (MQ=255)

                                                                            tCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAg               >  1:1457356/1‑91 (MQ=255)

                                                                             cGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGc              >  2:2687587/1‑91 (MQ=255)

                                                                              gAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGct             <  2:1038873/91‑1 (MQ=255)

                                                                              gAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGct             <  1:2766353/91‑1 (MQ=255)

                                                                                gCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctct           <  1:3854436/91‑1 (MQ=255)

                                                                                gCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGctct           >  1:1612431/1‑91 (MQ=255)

                                                                                 cGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTa          <  2:1192359/91‑1 (MQ=255)

                                                                                 cGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTa          >  1:2151480/1‑91 (MQ=255)

                                                                                 cGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTa          <  1:1816023/91‑1 (MQ=255)

                                                                                  gTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTAt         >  1:1944671/1‑91 (MQ=255)

                                                                                    aaTGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATgg       <  2:2970634/91‑1 (MQ=255)

                                                                                     aTGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGc      <  1:1274125/91‑1 (MQ=255)

                                                                                       ggATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCtt    >  2:1854219/1‑91 (MQ=255)

                                                                                       ggATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAACGGTGTTTAGATAGCTCTATGGCtt    >  2:3685766/1‑91 (MQ=255)

                                                                                         attattATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCg  <  1:3324611/91‑1 (MQ=255)

                                                                                         attattATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCg  >  2:45851/1‑91 (MQ=255)

ACTTGAAGCATCGATTTATTATTACCATAAATTTATATATAGAAATAATTTAAAGGCATAATAACCATAGTGCGTATCGAGCGTAATGGATTATTATGCCTTTGATTTTACTTGAATATAGCTGTGATTTGATCAACCTGTTCTTTATTTAAAGGGTGTTTAGATAGCTCTATGGCTTCG  >  USA300TCH1516_ALE/1353843‑1354022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.