BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	1662000 =	282 (1.380)	28 (0.160)	18/136	NT	11.9%	intergenic (‑87/+68)	USA300HOU_RS08275/rpmG2_2	5‑formyltetrahydrofolate cyclo‑ligase/50S ribosomal protein L33 2
*	?	USA300TCH1516_ALE	1662039 =	177 (1.020)	28 (0.160)	18/136	NT	11.9%	intergenic (‑126/+29)	USA300HOU_RS08275/rpmG2_2	5‑formyltetrahydrofolate cyclo‑ligase/50S ribosomal protein L33 2

Only 100 of 351 total aligned reads displayed.

TCATTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCACGGTGTAAAG  >  USA300TCH1516_ALE/1661910‑1662090

 cATTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTaa                                                                                           >  1:1748473/1‑91 (MQ=255)

  atgaTGTTGTCATGATTAATTATGCGACAAGTCTAAAATTTATTATTTCAAGTGAAAATCTTTTAGCATTTCATACGTGTGCATAATTaaa                                                                                          <  2:1449704/88‑1 (MQ=255)

  aTTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTaaa                                                                                          >  1:1928281/1‑91 (MQ=255)

     aTGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAg                                                                                       >  2:781951/1‑91 (MQ=255)

     aTGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAg                                                                                       <  1:1407289/91‑1 (MQ=255)

      tgttgtCATGAGGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAgg                                                                                      <  2:1282066/91‑1 (MQ=255)

      gaagaaattctgttcacgtgaaaacaaacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAgg                                                                                      >  1:463511‑M1/85‑91 (MQ=255)

       gttgtCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGt                                                                                     >  1:712913/1‑91 (MQ=255)

        ttgtCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTg                                                                                    >  1:209792/1‑91 (MQ=255)

        ttgtCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTg                                                                                    >  2:2566426/1‑91 (MQ=255)

        ttgtCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTATATCATTTCATACGTGTGCATAATTAAAAAGGTg                                                                                    >  2:2949391/1‑91 (MQ=255)

           tCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGaaa                                                                                 >  2:263580/1‑91 (MQ=255)

            cATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAAc                                                                                <  2:1562970/91‑1 (MQ=255)

            cATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAAc                                                                                >  2:2822586/1‑91 (MQ=255)

            cATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAAc                                                                                >  2:1608149/1‑91 (MQ=255)

              tgatgaATTATGCGACAATTCTAAAATTTATTATTTCAATTGCAAATCTTTTATCATTTCATACGCGTGCATAATTAAAAAGGTGAAACct                                                                              >  2:2862514/1‑91 (MQ=255)

                   aaTTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTAt                                                                         >  1:2555686/1‑91 (MQ=255)

                    aTTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATCATTAAAAAGGTGAAACCCCTTAtt                                                                        >  2:3344451/1‑91 (MQ=255)

                    aTTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTAtt                                                                        >  2:205323/1‑91 (MQ=255)

                    aTTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTAtt                                                                        >  2:3649605/1‑91 (MQ=255)

                    aTTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTAtt                                                                        <  2:720194/91‑1 (MQ=255)

                    aTTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTAtt                                                                        >  2:1228615/1‑91 (MQ=255)

                     ttATGCGACAATTCTATAATTTATTATTTCAATTGGAAATCGTTTATCTGTTCATACGTGTGCATGTTTAAAATGGTGAAACCTCTTAttt                                                                       <  2:3564729/91‑1 (MQ=255)

                     ttATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTAttt                                                                       <  1:2297207/91‑1 (MQ=255)

                     ttATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAAGTGAAACCTCTTAttt                                                                       <  2:3525482/91‑1 (MQ=255)

                      tATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTAtttt                                                                      >  1:1077264/1‑91 (MQ=255)

                      tATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTAtttt                                                                      >  1:1389436/1‑91 (MQ=255)

                      cgtgaaaacaaacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGTGAAACCTCTTAtttt                                                                      >  2:1407281‑M1/69‑91 (MQ=255)

                       aTGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTg                                                                     <  2:3251524/91‑1 (MQ=255)

                        tgaaaacaaacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGTGAAACCTCTTATTTTga                                                                    >  1:1827662‑M1/67‑91 (MQ=255)

                        tGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTga                                                                    <  2:1649613/91‑1 (MQ=255)

                        tGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTga                                                                    >  1:3095921/1‑91 (MQ=255)

                         gCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTgag                                                                   >  2:908168/1‑91 (MQ=255)

                           gACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGAt                                                                 <  1:3282561/91‑1 (MQ=255)

                               aTTCTAAATTTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAACAAGGTGAAACCTCTTATTTTGAGATTTCa                                                             <  2:3434676/91‑1 (MQ=255)

                                ttCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCAc                                                            <  2:388783/91‑1 (MQ=255)

                                aacaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGTGAAACCTCTTATTTTGAGATTTCAc                                                            >  2:265195‑M1/59‑91 (MQ=255)

                                 acaaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGTGAAACCTCTTATTTTGAGATTTCAcc                                                           >  1:2221292‑M1/58‑91 (MQ=255)

                                  cTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCt                                                          <  2:2908810/91‑1 (MQ=255)

                                  cTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCt                                                          >  2:372566/1‑91 (MQ=255)

                                   tAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCtt                                                         <  1:3527666/91‑1 (MQ=255)

                                   tAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCtt                                                         <  1:655535/91‑1 (MQ=255)

                                   aaactttacaccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCtt                                                         >  2:1377055‑M1/56‑91 (MQ=255)

                                     aaaTTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCtttt                                                       <  2:502499/91‑1 (MQ=255)

                                     aaaTTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCtttt                                                       >  2:2222589/1‑91 (MQ=255)

                                      attttATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCttttt                                                      <  2:1343925/89‑1 (MQ=255)

                                      aaTTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCttttt                                                      >  2:2719694/1‑91 (MQ=255)

                                       aTTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCtttttt                                                     >  2:1987121/1‑91 (MQ=255)

                                         ttattaTTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTAt                                                   <  2:2795526/91‑1 (MQ=255)

                                            ttattTCAATTGAAAATCTTTTGTCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGt                                                <  2:3192629/91‑1 (MQ=255)

                                            ttattTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGt                                                >  1:3614780/1‑91 (MQ=255)

                                             tattTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGtt                                               >  2:969407/1‑91 (MQ=255)

                                             ccgtgaaacaaaataatcattaaaattaaatttaaattaacaataAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGtt                                               >  1:968315‑M1/46‑91 (MQ=255)

                                              attTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTa                                              <  1:2893432/91‑1 (MQ=255)

                                               tttCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTaa                                             <  1:2450719/91‑1 (MQ=255)

                                                  aaacaaaataatcattaaaattaaatttaaattaacaattAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTaattt                                          >  1:3214972‑M1/41‑91 (MQ=255)

                                                   aaTTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTaattta                                         >  2:1843235/1‑91 (MQ=255)

                                                    aTTGAAAATCTTTTATCATTTCATACGTNTGCANAATTAAAAAGGNGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTaatttaa                                        <  1:1451947/91‑1 (MQ=255)

                                                    aTTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTaatttaa                                        <  1:2747785/91‑1 (MQ=255)

                                                    aTTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTaatttaa                                        >  2:663642/1‑91 (MQ=255)

                                                    aTTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTaatttaa                                        >  1:421390/1‑91 (MQ=255)

                                                    aTTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTaatttaa                                        <  2:1149102/91‑1 (MQ=255)

                                                       gAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTaatttaaatt                                     <  2:1707313/91‑1 (MQ=255)

                                                         aaaTCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTaatttaaattta                                   >  2:3096054/1‑91 (MQ=255)

                                                            tCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAaatttaatt                                >  2:1954735/1‑91 (MQ=255)

                                                             cTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAatttaaaattaaatt                               <  1:1020440/91‑4 (MQ=255)

                                                               tttATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAAtttaatttta                             <  2:3773539/91‑1 (MQ=255)

                                                               tgtataATTTCATACGTGTGCATAATTAAAAAGGGGATAACTCTCATATTGAGATTTCACCTTTTTTATTGCTAATGTAAAttgaatttta                             <  2:3957983/89‑1 (MQ=255)

                                                                 tATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAAtttaattttaat                           <  2:1307496/91‑1 (MQ=255)

                                                                 tATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAAtttaattttaat                           >  2:2089557/1‑91 (MQ=255)

                                                                  aTCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTAATTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATg                          >  2:3043925/1‑91 (MQ=255)

                                                                   tCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGa                         <  2:3849601/91‑1 (MQ=255)

                                                                   tCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGa                         <  1:3771196/91‑1 (MQ=255)

                                                                   tCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGa                         >  2:682184/1‑91 (MQ=255)

                                                                   tCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGa                         <  2:3496983/91‑1 (MQ=255)

                                                                    cATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGat                        >  2:152007/1‑91 (MQ=255)

                                                                      tttCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGatta                      <  2:225892/91‑1 (MQ=255)

                                                                      tttCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGatta                      <  1:1496108/91‑1 (MQ=255)

                                                                       ttCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGattat                     >  1:1314793/1‑91 (MQ=255)

                                                                        tCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGattatt                    <  2:1102894/91‑1 (MQ=255)

                                                                        tCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGattatt                    >  2:2427965/1‑91 (MQ=255)

                                                                        tCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGattatt                    >  2:219559/1‑91 (MQ=255)

                                                                        tCATACGTGTGCATAATCAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGattatt                    <  1:3392146/91‑1 (MQ=255)

                                                                        tCATACGTGAGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTGTTGTTAATTTAAATTTAATTTTAATGattatt                    >  2:440504/1‑91 (MQ=255)

                                                                        aaatttaaattaacaattAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGattatt                    >  1:3696878‑M1/19‑91 (MQ=255)

                                                                         cATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTAttt                   <  1:497680/91‑1 (MQ=255)

                                                                          aTACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTAtttt                  >  1:3013813/1‑91 (MQ=255)

                                                                           tACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTg                 <  1:1241472/91‑1 (MQ=255)

                                                                           tACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTg                 <  2:2473122/91‑1 (MQ=255)

                                                                               tgtgCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTc             >  1:1997179/1‑91 (MQ=255)

                                                                               tgtgCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTc             >  2:1047789/1‑91 (MQ=255)

                                                                                gtgCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCa            <  2:237630/91‑1 (MQ=255)

                                                                                gtgCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCa            <  2:2138738/91‑1 (MQ=255)

                                                                                   cATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCACgg         >  1:86951/1‑91 (MQ=255)

                                                                                   cATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCACgg         <  1:561734/91‑1 (MQ=255)

                                                                                   cATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCACgg         >  1:2632941/1‑91 (MQ=255)

                                                                                     tAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCACGgtg       <  1:2607068/91‑1 (MQ=255)

                                                                                      aaTTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCACGgtgt      >  1:75878/1‑91 (MQ=255)

                                                                                       aTTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCACGGTGTa     <  1:2942552/91‑1 (MQ=255)

                                                                                       aTTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCACGGTGTa     >  1:3320376/1‑91 (MQ=255)

TCATTATGTTGTCATGATGAATTATGCGACAATTCTAAAATTTATTATTTCAATTGAAAATCTTTTATCATTTCATACGTGTGCATAATTAAAAAGGTGAAACCTCTTATTTTGAGATTTCACCTTTTTTATTGTTAATTTAAATTTAATTTTAATGATTATTTTGTTTCACGGTGTAAAG  >  USA300TCH1516_ALE/1661910‑1662090

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.