| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1665362 | 83 (0.410) | 20 (0.150) | 9/108 | NT | 26.4% | intergenic (‑237/+40) | sodA/zur | Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein |
| ? | USA300TCH1516_ALE | = 1665378 | 56 (0.410) | intergenic (‑253/+24) | sodA/zur | Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein | |||||
Only 100 of 341 total aligned reads displayed.
TAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTG > USA300TCH1516_ALE/1665272‑1665452 | tacctggtgttaatattcacaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCa < 1:3105174‑M1/26‑1 (MQ=255) aaaaaGTTAACAGATTTGCCATAAGATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAt < 2:3685229/91‑1 (MQ=255) aaaaaGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAt < 1:2716631/91‑1 (MQ=255) aaaaaGTTAACAGATTTGCCATAAAACCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAt < 1:3397519/91‑1 (MQ=255) aaaGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATAc < 2:2442564/91‑1 (MQ=255) gTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATc < 1:3794137/91‑1 (MQ=255) tAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggt < 2:17888‑M1/91‑9 (MQ=255) tAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTg > 2:408926/1‑91 (MQ=255) tAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTg < 2:1357282/91‑1 (MQ=255) tAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTg < 2:1933861/91‑1 (MQ=255) tAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTg < 1:74784/91‑1 (MQ=255) tAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTg < 2:2617550/91‑1 (MQ=255) aaCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGa < 2:1249703/91‑1 (MQ=255) aaCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGa > 1:211583/1‑91 (MQ=255) aaCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGa > 1:3311653/1‑91 (MQ=255) aCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGAc > 2:697586/1‑91 (MQ=255) aCAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGAc < 2:2095412/91‑1 (MQ=255) cAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGAcc > 1:1420803/1‑91 (MQ=255) aGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCa < 1:926212/91‑1 (MQ=255) ttGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAAtg < 1:1827155/91‑1 (MQ=255) ttGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAAtg < 1:1263395/91‑1 (MQ=255) tcacaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCA‑‑CATCTGACCAAAtgtg > 1:2514721‑M1/50‑91 (MQ=255) tGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtat < 1:1437745‑M1/91‑18 (MQ=255) tGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtat < 1:3500714‑M1/91‑18 (MQ=255) tGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGt < 1:1319213‑M2/91‑2 (MQ=255) gCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTCTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtg < 1:1174830‑M2/91‑3 (MQ=255) gCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATCTAAATAAATGAGATTTATGCAcatttggtcagatgtatg < 2:2335656‑M1/91‑19 (MQ=255) gCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatg < 1:1496203‑M1/91‑19 (MQ=255) gCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtg > 2:2372809‑M2/1‑89 (MQ=255) acaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAAtgtg > 2:1852025‑M1/48‑91 (MQ=255) acaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAAtgtg > 1:597815‑M1/48‑91 (MQ=255) ccATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCAcatttggtcagatgtatgc < 1:2670718‑M1/91‑20 (MQ=255) aaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCa > 1:295544‑M1/46‑91 (MQ=255) aaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCa > 1:2649704‑M1/46‑91 (MQ=255) aacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCAt > 1:1563875‑M1/45‑91 (MQ=255) aacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCAt > 2:2204503‑M1/45‑91 (MQ=255) aTAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcat < 1:3574364‑M2/91‑6 (MQ=255) aaTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaat < 1:3954087‑M2/91‑10 (MQ=255) aTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatc > 2:3605872‑M2/1‑81 (MQ=255) tCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatct < 1:1302588‑M2/91‑12 (MQ=255) tCATACGAACGGAGTATGAAATGAACCTTTATCTGCTATAATATAGAGGAATGAGATTTATGCATACATCTTACCAAATGtgcataaatct > 2:1202789‑M2/1‑80 (MQ=255) aTACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctca < 2:520650‑M2/91‑14 (MQ=255) aTACGAACGGAATATGAAACAAGCCTTTATCTTCTATAATATAAAGAAATGATATTTATGCATACATCTGACCAAAAGtgcataaatctca > 2:1870545‑M2/1‑78 (MQ=255) tACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcat > 2:3809147‑M2/1‑77 (MQ=255) tACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcat < 2:2446935‑M2/91‑15 (MQ=255) tACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcat < 1:2583309‑M2/91‑15 (MQ=255) gAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttc > 1:3568019‑M2/1‑74 (MQ=255) aaCGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttct < 1:1862453‑M2/91‑19 (MQ=255) aCGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctt > 2:2927307‑M2/1‑72 (MQ=255) gTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatat > 1:1900552‑M2/1‑67 (MQ=255) gTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatat > 1:980569‑M2/1‑67 (MQ=255) tATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatatt > 2:273726‑M2/1‑66 (MQ=255) tgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTaa < 2:3607822/91‑1 (MQ=255) gaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATATATGCAcatttggtcagatgtatgcataaatctcatttctttatattata < 1:2458359‑M1/91‑45 (MQ=255) aatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCt < 2:3387183/91‑1 (MQ=255) tgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTg < 1:1748109/91‑1 (MQ=255) aaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGc < 2:160631/91‑1 (MQ=255) tATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACt > 2:2172255/1‑91 (MQ=255) tATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACt < 2:1381713/91‑1 (MQ=255) aTCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTc > 2:322344/1‑91 (MQ=255) tataatataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGGCTCACATac < 2:2420780/91‑1 (MQ=255) tataatataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATac < 1:580846/91‑1 (MQ=255) ataatataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATaca > 2:2899101/1‑91 (MQ=255) aatataaAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcata < 1:433302‑M1/91‑67 (MQ=255) AATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACAcc > 2:3488650‑M1/1‑91 (MQ=255) AATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACAcc < 2:3297413‑M1/91‑1 (MQ=255) AATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACAcc < 1:2265856‑M1/91‑1 (MQ=255) atataaAGAAATGAGATTTATGCAcatttggtcggatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatac < 1:3242240‑M1/91‑68 (MQ=255) taaAGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactcc > 2:2153509‑M1/1‑21 (MQ=255) aaGAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgt > 2:3012026‑M1/1‑19 (MQ=255) AAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAAc < 1:362079‑M1/91‑1 (MQ=255) AAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAAc > 1:1013049‑M1/1‑91 (MQ=255) AGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACt < 2:1029005‑M1/91‑1 (MQ=255) gAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttc > 1:3568018‑M1/1‑17 (MQ=255) gAAATGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttc < 1:867355‑M1/91‑75 (MQ=255) AAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTc < 2:2651346‑M1/91‑1 (MQ=255) aTGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgta > 1:1899540‑M1/1‑14 (MQ=255) aTGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgta < 2:32922‑M1/91‑78 (MQ=255) tGAGATTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtat < 2:3877886‑M1/91‑79 (MQ=255) TGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATaaacttgaag > 2:753934‑M1/1‑87 (MQ=255) gagaTTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtata > 2:834313‑M1/1‑12 (MQ=255) GAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAaga < 2:3910620‑M1/91‑2 (MQ=255) agaTTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatga > 2:1586605‑M1/1‑11 (MQ=255) agaTTTATGCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatga < 1:506165‑M1/91‑81 (MQ=255) AGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt > 2:3065346‑M1/1‑91 (MQ=255) AGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt > 1:2002983‑M1/1‑91 (MQ=255) AGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt > 2:3371941‑M1/1‑91 (MQ=255) gaTTTATGCATATATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgat < 1:3030076‑M2/91‑66 (MQ=255) GATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgttt < 2:1513901‑M1/91‑1 (MQ=255) TTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtg > 1:2251217‑M1/1‑91 (MQ=255) TTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtg < 2:459396‑M1/91‑1 (MQ=255) ATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtt < 1:3714780‑M1/91‑1 (MQ=255) ATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtt < 2:188143‑M1/91‑1 (MQ=255) gCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatgg < 2:3212116‑M1/91‑89 (MQ=255) gCAcatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatgg > 1:2367144‑M1/1‑3 (MQ=255) gCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatgg < 2:2290713‑M2/91‑73 (MQ=255) cacatttggtcagatgtatgcataaatctcatttctttatattatagaagataaagtttcatttcatactccgttcgtatgattttatggc > 2:1098486‑M1/1‑2 (MQ=255) cacatttggtcagatgtatgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatggc < 1:1174706‑M1/91‑90 (MQ=255) cATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatggc < 1:2851332‑M2/91‑74 (MQ=255) CATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtttgt > 1:2762343‑M1/1‑91 (MQ=255) | TAAAAAGTTAACAGATTTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTG > USA300TCH1516_ALE/1665272‑1665452 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |