| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1665362 | 83 (0.410) | 20 (0.150) | 9/108 | NT | 26.4% | intergenic (‑237/+40) | sodA/zur | Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein |
| ? | USA300TCH1516_ALE | = 1665378 | 56 (0.410) | intergenic (‑253/+24) | sodA/zur | Superoxide dismutase [Mn] 1/Zinc‑specific metallo‑regulatory protein | |||||
Only 100 of 233 total aligned reads displayed.
TTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGT > USA300TCH1516_ALE/1665288‑1665468 | ttGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAAtg < 1:1827155/91‑1 (MQ=255) cacaaacacagacttgacgtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAAtgt > 1:3392657‑M1/49‑91 (MQ=255) gCCATAAGATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtg > 2:1234882‑M2/1‑89 (MQ=255) gCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtg < 1:1174706‑M2/91‑3 (MQ=255) acaaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAAtgtg > 1:597815‑M1/48‑91 (MQ=255) ccATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgc > 1:2367144‑M2/1‑88 (MQ=255) ccATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgc < 2:3212116‑M2/91‑4 (MQ=255) caaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGc > 1:132721‑M1/47‑91 (MQ=255) aaacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCa > 1:295544‑M1/46‑91 (MQ=255) aacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCAt > 1:1400448‑M1/45‑91 (MQ=255) aacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCAt > 2:1085312‑M1/45‑91 (MQ=255) aacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCAt > 2:686774‑M1/45‑91 (MQ=255) aacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCAt > 2:2204503‑M1/45‑91 (MQ=255) aacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCAt > 1:2234381‑M1/45‑91 (MQ=255) aacacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCAt > 1:1563875‑M1/45‑91 (MQ=255) aacacaaacttgaagtttatggtgtatgtgaggcttgccaagatTAATATAAAGAAATGAGATTTATGCATACAGCTGACCAAATGTGCAt > 2:2623304‑M1/45‑91 (MQ=255) acacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATa > 1:123312‑M1/44‑91 (MQ=255) acacaaacttgaagtttatggtgtatgtgagtcttgccaagatTAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATa > 1:2859353‑M1/44‑91 (MQ=255) aaTGATACGTACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaat > 1:3554610‑M2/1‑82 (MQ=255) aaTCATACGAACGGAGTATGAAATGAGCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaat > 2:1322807‑M2/1‑82 (MQ=255) aaTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaat < 1:3954087‑M2/91‑10 (MQ=255) aTCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatc > 2:3605872‑M2/1‑81 (MQ=255) aTACGAACGGAATATGAAACAAGCCTTTATCTTCTATAATATAAAGAAATGATATTTATGCATACATCTGACCAAAAGtgcataaatctca > 2:1870545‑M2/1‑78 (MQ=255) tACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcat < 2:2446935‑M2/91‑15 (MQ=255) tACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcat > 2:3809147‑M2/1‑77 (MQ=255) aaCGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttct < 1:1862453‑M2/91‑19 (MQ=255) aaCGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttct < 1:1309398‑M2/91‑19 (MQ=255) ggAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttcttta > 2:2153509‑M2/1‑70 (MQ=255) aGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttata < 1:857751‑M2/91‑24 (MQ=255) aGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttata > 1:357008‑M2/1‑68 (MQ=255) gTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatat > 1:980569‑M2/1‑67 (MQ=255) gTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatat > 1:514347‑M2/1‑67 (MQ=255) gTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatat > 1:1900552‑M2/1‑67 (MQ=255) gTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatat < 1:3599747‑M2/91‑25 (MQ=255) gTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCCGACCAAATGtgcataaatctcatttctttatat < 1:3242240‑M2/91‑25 (MQ=255) tATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatatt < 1:433302‑M2/91‑26 (MQ=255) atgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatatta < 1:2571549‑M2/91‑27 (MQ=255) tgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTaa < 2:800430/91‑1 (MQ=255) tgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTaa < 2:3607822/91‑1 (MQ=255) tgaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTaa < 1:207759/91‑1 (MQ=255) gaaatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAAt > 1:1988723/1‑91 (MQ=255) aatgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCt < 2:3387183/91‑1 (MQ=255) tgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTg < 1:1748109/91‑1 (MQ=255) tgaaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTg > 2:2408877/1‑91 (MQ=255) aaCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGc < 2:160631/91‑1 (MQ=255) aCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCa > 2:2000747/1‑91 (MQ=255) aCCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCa < 1:2253382/91‑1 (MQ=255) ccTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCaa < 1:3763479/91‑1 (MQ=255) aTCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTc < 1:888674/91‑1 (MQ=255) aTCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTc > 2:322344/1‑91 (MQ=255) tataatataaAGAAATGAGATTTATTCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATac < 1:3691948/91‑1 (MQ=255) tataatataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATac < 1:580846/91‑1 (MQ=255) ataatataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATaca > 2:3372205/1‑91 (MQ=255) ataatataaAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATaca < 2:3474892/91‑1 (MQ=255) AATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACAcc < 2:3297413‑M1/91‑1 (MQ=255) TATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCAt > 1:1459158‑M1/1‑91 (MQ=255) AAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAAc > 1:1013049‑M1/1‑91 (MQ=255) AGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACt < 2:2739496‑M1/91‑1 (MQ=255) GAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACtt > 2:2179003‑M1/1‑91 (MQ=255) ATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCaa > 1:3733284‑M1/1‑91 (MQ=255) ttAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAACCTTCAAg > 2:47889‑M1/3‑91 (MQ=255) TGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATaaacttgaag > 2:753934‑M1/1‑87 (MQ=255) TGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAg > 2:2292421‑M1/1‑91 (MQ=255) TGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAg > 2:3338043‑M1/1‑91 (MQ=255) TGAGATTTATGCATACATCTGACCAAATGGGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAg > 2:253177‑M1/1‑91 (MQ=255) GAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAaga < 2:3910620‑M1/91‑2 (MQ=255) AGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt > 2:3065346‑M1/1‑91 (MQ=255) AGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtt > 1:996738‑M1/1‑91 (MQ=255) AGATTTATGCATACATCTGACCAAATGGGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGGCTCACATACACCATAAGCTTCAAgtt > 2:1809078‑M1/1‑91 (MQ=255) gaTTTATGCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgat < 1:3030123‑M2/91‑66 (MQ=255) GATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgttt < 2:1513901‑M1/91‑1 (MQ=255) TTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtg < 2:459396‑M1/91‑1 (MQ=255) TTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtg > 1:2251217‑M1/1‑91 (MQ=255) ATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtt < 2:188502‑M1/91‑1 (MQ=255) TGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgttt > 2:211583‑M1/1‑91 (MQ=255) gCATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatgg < 1:2670390‑M2/91‑73 (MQ=255) cATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatggc < 1:2717132‑M2/91‑74 (MQ=255) cATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatggc < 1:2851332‑M2/91‑74 (MQ=255) cATACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatggc < 1:1496203‑M2/91‑74 (MQ=255) cATACATCTGACCAAATGtgcataaatctcatttatttagattatagaagataaaggttcatttcatactccgttcgtatgattttatggc < 2:2335656‑M2/91‑74 (MQ=255) CATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtttgt > 1:2762343‑M1/1‑91 (MQ=255) CATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATAGTAATCTTGGCAAGACTCACATACACCATAAACTTCAAgtttgtgtttgt < 1:3425636‑M1/91‑1 (MQ=255) ATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGtttgtgtttgtg < 2:3872839‑M1/91‑1 (MQ=255) tACATCTGACCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatggcaa < 2:1873035‑M2/91‑76 (MQ=255) cATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAATACTCACATACACCATAAACTTCAATTTTGTGTTTGTGAat < 2:363297/91‑1 (MQ=255) cATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAat < 1:3108749/91‑1 (MQ=255) aTCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAata < 2:349312/91‑1 (MQ=255) tCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAatat < 2:568050/91‑1 (MQ=255) tCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAatat < 1:2339632/91‑1 (MQ=255) gACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTaa > 2:1175893/1‑91 (MQ=255) gACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTaa > 1:2585851/1‑91 (MQ=255) gACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTaa > 2:154901/1‑91 (MQ=255) aCCAAATGtgcataaatctcatttctttatattatagaagataaaggttcatttcatactccgttcgtatgattttatggcaaatctgtta < 2:17888‑M2/91‑84 (MQ=255) aCCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAac > 1:2764270/1‑91 (MQ=255) aCCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAac > 2:2414400/1‑91 (MQ=255) aCCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAac > 1:1293563/1‑91 (MQ=255) aaTGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCACGTTTGTGTTTGTGAATATTAACAccc > 2:2912433/1‑90 (MQ=255) aaTGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCa < 2:2730387/91‑1 (MQ=255) aaTGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCa > 2:1584987/1‑91 (MQ=255) gtgCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGt < 1:2457766/91‑1 (MQ=255) | TTGCCATAAAATCATACGAACGGAGTATGAAATGAACCTTTATCTTCTATAATATAAAGAAATGAGATTTATGCATACATCTGACCAAATGTGCATAAATCTCATTTCTTTATATTAATCTTGGCAAGACTCACATACACCATAAACTTCAAGTTTGTGTTTGTGAATATTAACACCAGGT > USA300TCH1516_ALE/1665288‑1665468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |