BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1676788	167 (0.820)	15 (0.080)	8/156	NT	8.7%	intergenic (‑344/‑75)	ccpN/glyQS	Transcriptional repressor CcpN/Glycine‑‑tRNA ligase
*	?	USA300TCH1516_ALE	= 1676835	154 (0.780)	15 (0.080)	8/156	NT	8.7%	intergenic (‑391/‑28)	ccpN/glyQS	Transcriptional repressor CcpN/Glycine‑‑tRNA ligase

Only 100 of 213 total aligned reads displayed.

TAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGG  >  USA300TCH1516_ALE/1676699‑1676878

taaaaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGt                                                                                           <  1:3002700/91‑1 (MQ=255)

taaaaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGt                                                                                           <  2:3851531/91‑1 (MQ=255)

 aaaaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTc                                                                                          >  2:2341822/1‑91 (MQ=255)

  aaaGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTcc                                                                                         <  2:2065040/91‑1 (MQ=255)

    aGCGAGTGCCTACACTAATCTGGGTGGAACCGCGGGCTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCa                                                                                       >  2:1895116/1‑91 (MQ=255)

    aGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCa                                                                                       <  1:2142779/91‑1 (MQ=255)

     gCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCAt                                                                                      <  1:1044916/91‑1 (MQ=255)

      cGAGTGACTACACTAATTTAGGTGTAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATg                                                                                     <  2:2912115/91‑1 (MQ=255)

       gAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAGTTTAAAATATTAACTCGTCCCATgg                                                                                    >  1:3669192/1‑91 (MQ=255)

         gTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGaa                                                                                  <  2:2462761/91‑1 (MQ=255)

         gTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGaa                                                                                  >  2:527613/1‑91 (MQ=255)

          tGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAg                                                                                 >  2:1754416/1‑91 (MQ=255)

           gACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGt                                                                                >  2:1785911/1‑91 (MQ=255)

           gACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGt                                                                                <  1:3425813/91‑1 (MQ=255)

           gACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGt                                                                                >  2:1565477/1‑91 (MQ=255)

            aCTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTCTATACAATTTAAAATATTAACTCGTCCCATGGAAGTa                                                                               <  1:1575437/91‑1 (MQ=255)

             cTACACTAATTGGGGTGGAACCGTGGGTTAAATACGTAACTTATTTTGTATTATATACAGTTTAAAATATTAACTCGTCCCATGGAAGTaa                                                                              <  2:3023416/91‑1 (MQ=255)

                cacTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGc                                                                           <  1:1787236/91‑1 (MQ=255)

                cacTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGc                                                                           <  2:14225/91‑1 (MQ=255)

                 acTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCa                                                                          >  2:282098/1‑91 (MQ=255)

                  cTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCat                                                                         >  1:1635869/1‑91 (MQ=255)

                     aTTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATAtt                                                                      >  1:3915669/1‑91 (MQ=255)

                      tttGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCatatat                                                                     >  2:1639745/1‑89 (MQ=255)

                       ttGGGTGGAACCGCGGGTTAAATACGTAACTCATTTTGTATCATATACAATTTAAAATATTAACTCGAGCCATGGAAGTCAAGCATATTTa                                                                    >  2:3009313/1‑91 (MQ=255)

                        tGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTAc                                                                   <  1:2635971/91‑1 (MQ=255)

                        tGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTAc                                                                   >  1:1368664/1‑91 (MQ=255)

                         gggTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACt                                                                  >  2:1610541/1‑91 (MQ=255)

                              gAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCt                                                             >  2:248336/1‑91 (MQ=255)

                              gAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCt                                                             <  2:2282486/91‑1 (MQ=255)

                              gAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCt                                                             <  1:1333966/91‑1 (MQ=255)

                              gAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCt                                                             >  1:1702935/1‑91 (MQ=255)

                               aaCCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTg                                                            >  2:2510278/1‑91 (MQ=255)

                                  cgcgGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgcttt                                                         <  2:3264929‑M1/91‑36 (MQ=255)

                                   gcgGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGtcccatggaaaataacagcatagtaaatatgcttta                                                        <  2:672732‑M1/91‑37 (MQ=255)

                                   gcgGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTAt                                                        <  1:3364713/91‑1 (MQ=255)

                                   gcgGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTAt                                                        <  1:1729055/91‑1 (MQ=255)

                                    cgGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttac                                                       <  2:123618‑M1/91‑38 (MQ=255)

                                     gggTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGtcccatggaaaataacagcatagtaaatatgctttact                                                      <  2:2702703‑M1/91‑39 (MQ=255)

                                     gggTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGtcccatggaaaataacagcatagtaaatatgctttact                                                      <  1:2602370‑M1/91‑39 (MQ=255)

                                     gggTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttact                                                      <  1:1851882‑M1/91‑39 (MQ=255)

                                      ggTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTAtttt                                                     <  1:2897132/91‑1 (MQ=255)

                                      ggTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTAtttt                                                     >  1:404379/1‑91 (MQ=255)

                                       gTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttacttc                                                    <  1:2071543‑M1/91‑41 (MQ=255)

                                        ttAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttacttcc                                                   <  1:482146‑M1/91‑42 (MQ=255)

                                        ttAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGccccatggaaaataacagcatagtaaatatgctttacttcc                                                   <  2:1335208‑M1/91‑42 (MQ=255)

                                        ttAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTcc                                                   >  2:1817932/1‑91 (MQ=255)

                                        ttAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTcc                                                   <  2:893391/91‑1 (MQ=255)

                                        ttAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTcc                                                   >  1:2468214/1‑91 (MQ=255)

                                        ttAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTcc                                                   <  1:1273499/91‑1 (MQ=255)

                                          aaaTACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCAt                                                 <  2:3293792/91‑1 (MQ=255)

                                          aaaTACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCAt                                                 <  2:864754/91‑1 (MQ=255)

                                            aTACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATgg                                               <  1:386729/91‑1 (MQ=255)

                                               cGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGc                                            <  1:3950503‑M2/91‑2 (MQ=255)

                                                  aaCTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGtt                                         >  1:1015855/1‑91 (MQ=255)

                                                   aCTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGttt                                        >  1:2171700/1‑91 (MQ=255)

                                                   aCTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGttt                                        >  1:2926585/1‑91 (MQ=255)

                                                   aCTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGttt                                        >  1:3471820/1‑91 (MQ=255)

                                                    cTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGtttt                                       <  2:2628370/91‑1 (MQ=255)

                                                     ttagtttGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTc                                      <  1:3557526/87‑1 (MQ=255)

                                                     ttATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTc                                      <  2:390391/91‑1 (MQ=255)

                                                     ttATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTc                                      >  2:3721541/1‑91 (MQ=255)

                                                         tttGTATTATATACCATTTAAAATATCAACTCGTCCCATGGACGTAACGCATATTTACTATGCTGTTATCGTCCATGGGGCGACTTCATGt                                  >  2:2244197/1‑91 (MQ=255)

                                                         tttGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGt                                  <  2:3411231/91‑1 (MQ=255)

                                                         tttGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGt                                  <  2:3411353/91‑1 (MQ=255)

                                                          ttGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTa                                 <  1:2294397/91‑1 (MQ=255)

                                                            gTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATg                               >  2:3655193/1‑91 (MQ=255)

                                                              attatATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGCATgag                             >  2:3208548/1‑91 (MQ=255)

                                                                  tataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGgaga                         >  2:1904525/1‑91 (MQ=255)

                                                                  tataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGgaga                         >  1:2461353/1‑91 (MQ=255)

                                                                   attcAATTTAAAATAGTATCTCGTCACTTGGAAGTATAGCATATGTACTATGCGGTTCTTTTACGTGGGGCGTTTTCATGTATGAGGggag                        <  2:1478654/88‑1 (MQ=255)

                                                                   ataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGagag                        <  1:781518/91‑1 (MQ=255)

                                                                   ataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGagag                        >  1:922567/1‑91 (MQ=255)

                                                                   ataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGagag                        >  2:1060455/1‑91 (MQ=255)

                                                                   ataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGagag                        >  1:382753/1‑91 (MQ=255)

                                                                    taCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAgg                       <  2:2530424/91‑1 (MQ=255)

                                                                        aTTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAAt                   >  2:167024/1‑91 (MQ=255)

                                                                        aTTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGAAAt                   <  2:408391/91‑1 (MQ=255)

                                                                         tttAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAAtt                  >  2:2782086/1‑91 (MQ=255)

                                                                             aaaTATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATgg              >  2:2425668/1‑91 (MQ=255)

                                                                              aaTATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcgagttaatattttaaattgtatataatacaa             <  1:1139153‑M2/91‑33 (MQ=255)

                                                                              aaTATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGc             <  2:101267/91‑1 (MQ=255)

                                                                               atatTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATgtca            <  1:3246028/91‑4 (MQ=255)

                                                                                tatTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCaa           >  2:1436438/1‑91 (MQ=255)

                                                                                 atTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCaaa          >  2:1689698/1‑91 (MQ=255)

                                                                                 atTAACTCGTCCCATGGAAGTAAAGCATATTAACTATGCTGTTACTTTCCATGAGGCGTTTTCATGTGTGAGGAGAGGTAATTATGGCaaa          <  1:3160017/91‑1 (MQ=255)

                                                                                  ttAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCaaaa         >  1:2759102/1‑91 (MQ=255)

                                                                                  ttAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCaaaa         <  1:698752/91‑1 (MQ=255)

                                                                                    aaCTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGa       <  2:2732043/91‑1 (MQ=255)

                                                                                    aaCTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGa       <  1:2724442/91‑1 (MQ=255)

                                                                                    aaCTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGa       <  2:1783132/91‑1 (MQ=255)

                                                                                     aCTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGat      >  1:2256602/1‑91 (MQ=255)

                                                                                     aCTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGat      >  1:3222399/1‑91 (MQ=255)

                                                                                      cTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGTGAGGTAATTATGGCAAAAGata     >  1:646992/1‑91 (MQ=255)

                                                                                      cTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGata     >  1:839245/1‑91 (MQ=255)

                                                                                       tCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGatat    >  1:1555488/1‑91 (MQ=255)

                                                                                       tCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGatat    <  1:2237081/91‑1 (MQ=255)

                                                                                       tCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGatat    >  2:3632350/1‑91 (MQ=255)

                                                                                        cGccccatggaaaataacagcatagtaaatatgctttacttccatgggacgagttaatattttaaattgtatataatacaaaataagttac   >  1:1438651‑M1/1‑2 (MQ=255)

                                                                                        cGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATg   <  1:281234/91‑1 (MQ=255)

                                                                                         gccccatggaaaataacagcatagtaaatatgctttacttccatgggacgagttaatattttaaattgtatataatacaaaataagttacg  <  1:366488‑M1/91‑91 (MQ=255)

TAAAAGCGAGTGACTACACTAATTTGGGTGGAACCGCGGGTTAAATACGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGG  >  USA300TCH1516_ALE/1676699‑1676878

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.