BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1676788	167 (0.820)	15 (0.080)	8/156	NT	8.7%	intergenic (‑344/‑75)	ccpN/glyQS	Transcriptional repressor CcpN/Glycine‑‑tRNA ligase
*	?	USA300TCH1516_ALE	= 1676835	154 (0.780)	15 (0.080)	8/156	NT	8.7%	intergenic (‑391/‑28)	ccpN/glyQS	Transcriptional repressor CcpN/Glycine‑‑tRNA ligase

Only 100 of 202 total aligned reads displayed.

CGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCTGGT  >  USA300TCH1516_ALE/1676746‑1676925

cGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGc                                                                                           <  1:366488‑M2/91‑2 (MQ=255)

   aaCTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGtt                                                                                        >  1:1015855/1‑91 (MQ=255)

    aCTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGttt                                                                                       <  2:1636763/91‑1 (MQ=255)

    aCTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGttt                                                                                       >  1:3471820/1‑91 (MQ=255)

    aCTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGttt                                                                                       >  1:2926585/1‑91 (MQ=255)

     cTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGtttt                                                                                      >  1:3224828/1‑91 (MQ=255)

     cTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGtttt                                                                                      <  2:2628370/91‑1 (MQ=255)

     cTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGtttt                                                                                      >  2:3420366/1‑91 (MQ=255)

      ttagtttGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTc                                                                                     <  1:3557526/87‑1 (MQ=255)

      ttATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTc                                                                                     >  1:846011/1‑91 (MQ=255)

      ttATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTc                                                                                     <  2:390391/91‑1 (MQ=255)

      ttATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTc                                                                                     >  2:3721541/1‑91 (MQ=255)

        aTTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCAt                                                                                   >  1:2143216/1‑91 (MQ=255)

         ttttGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATg                                                                                  >  2:3265036/1‑91 (MQ=255)

          tttGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGt                                                                                 <  2:3411269/91‑1 (MQ=255)

           ttGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTa                                                                                <  1:2294397/91‑1 (MQ=255)

             gTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATg                                                                              >  2:3655147/1‑91 (MQ=255)

             gTATTATATACAATTTAAAATATTAAATCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATg                                                                              >  2:2247078/1‑91 (MQ=255)

               attatATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGCATgag                                                                            >  2:3208548/1‑91 (MQ=255)

                   tataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGgaga                                                                        >  1:2461781/1‑91 (MQ=255)

                    ataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGagag                                                                       >  1:382753/1‑91 (MQ=255)

                    ataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGagag                                                                       >  2:1060455/1‑91 (MQ=255)

                    ataCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGATTTCATGTATGAGGagag                                                                       >  2:1436853/1‑91 (MQ=255)

                     taCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAgg                                                                      <  2:2530424/91‑1 (MQ=255)

                      aCAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGt                                                                     >  2:418207/1‑91 (MQ=255)

                         aTTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAAt                                                                  >  2:167024/1‑91 (MQ=255)

                            tAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTAt                                                               >  1:3163359/1‑91 (MQ=255)

                            tAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTAt                                                               >  1:1196372/1‑91 (MQ=255)

                               aaTATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcgagttaatattttaaattgtatataatacaa                                                            <  1:1139153‑M2/91‑33 (MQ=255)

                               aaTATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGc                                                            <  2:101267/91‑1 (MQ=255)

                                  atTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCaaa                                                         <  1:1632684/91‑1 (MQ=255)

                                   ttAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCaaaa                                                        >  1:2759102/1‑91 (MQ=255)

                                     aaCTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGa                                                      <  2:1783132/91‑1 (MQ=255)

                                     aaCTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGa                                                      <  2:2732043/91‑1 (MQ=255)

                                       cTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGTGAGGTAATTATGGCAAAAGata                                                    >  1:646992/1‑91 (MQ=255)

                                        tCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGatat                                                   >  1:1555488/1‑91 (MQ=255)

                                        tCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGatat                                                   <  1:2237258/91‑1 (MQ=255)

                                         cGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATg                                                  <  1:281234/91‑1 (MQ=255)

                                           tCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGa                                                >  2:167981/1‑91 (MQ=255)

                                            cccATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGAt                                               <  1:3304741/91‑1 (MQ=255)

                                               aTGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACa                                            <  1:3908507/91‑1 (MQ=255)

                                                tGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCAGGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACaa                                           <  2:107645/91‑1 (MQ=255)

                                                 ggAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcgagttaatattttaaattgtatataatacaaaataagttacgtatttaa                                          <  1:482146‑M2/91‑51 (MQ=255)

                                                 ggAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAAt                                          <  1:2726959/91‑1 (MQ=255)

                                                 ggAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAAt                                          <  2:1271261/91‑1 (MQ=255)

                                                 ggAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAAt                                          <  2:349699/91‑1 (MQ=255)

                                                  gAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcgagttaatattttaaattgtatataatacaaaataagttacgtatttaac                                         <  1:2071543‑M2/91‑52 (MQ=255)

                                                   aaGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTg                                        <  1:1038215/91‑1 (MQ=255)

                                                    aGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcgagttaatattttaaattgtatataatacaaaataagttacgtatttaaccc                                       <  1:387941‑M2/91‑54 (MQ=255)

                                                    aGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcgagttaatattttaaattgtatataatacaaaataagttacgtatttaaccc                                       <  2:138237‑M2/91‑54 (MQ=255)

                                                    aGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGcgagttaatattttaaattgtatataatacaaaataagttacgtatttaaccc                                       <  1:1851882‑M2/91‑54 (MQ=255)

                                                    aGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGt                                       >  2:2219363/1‑91 (MQ=255)

                                                    aGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGt                                       >  2:2331765/1‑91 (MQ=255)

                                                    aGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCACGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGt                                       >  1:3140212/1‑91 (MQ=255)

                                                    aGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGAcgagttaatattttaaattgtatataatacaaaataagttacgtatttaaccc                                       <  1:2602455‑M2/91‑54 (MQ=255)

                                                     gTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACACTTGtt                                      >  2:2471447/1‑91 (MQ=255)

                                                     gTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGtt                                      <  1:1410615/91‑1 (MQ=255)

                                                     gTAAAGCATATTGACTATGCTGTTATTTTCCATGGGGcgagttaatatcttaaattgtatataatacaacataagttacctcttcaacccg                                      <  2:2664253‑M2/91‑55 (MQ=255)

                                                       acaGCATAGTAAATATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCACCAGATATGGACACAATTGTTTc                                    >  2:3261837/3‑91 (MQ=255)

                                                       aaaGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTc                                    >  2:901253/1‑91 (MQ=255)

                                                        aaGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCa                                   <  1:3518772/91‑1 (MQ=255)

                                                         aGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCAt                                  >  2:2323036/1‑91 (MQ=255)

                                                            atatTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAg                               <  2:664629/91‑1 (MQ=255)

                                                             tatTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGc                              >  2:3951409/1‑91 (MQ=255)

                                                             tatTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGc                              <  2:1999229/91‑1 (MQ=255)

                                                               tttACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCaa                            >  1:1497589/1‑91 (MQ=255)

                                                                 tACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGCGAGGTAATTATGGCAAAAGATATGGATACAATTGATTCATTAGCaaaa                          >  2:1199205/1‑91 (MQ=255)

                                                                 tACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCaaaa                          >  1:2658244/1‑91 (MQ=255)

                                                                 tACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCaaaa                          >  2:1973233/1‑91 (MQ=255)

                                                                   cTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGTCGAGGCACTTCTGGCAAGCGATATGGATACAATTGTGTCATTAGCAAAaca                        >  2:836984/1‑91 (MQ=255)

                                                                   cTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAaca                        >  2:2446598/1‑91 (MQ=255)

                                                                   cTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAaca                        <  2:468280/91‑1 (MQ=255)

                                                                    tATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAacac                       >  1:3093160/1‑91 (MQ=255)

                                                                    tATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAacac                       >  2:3005860/1‑91 (MQ=255)

                                                                     aTGGTGTTATTTTCCATGGGGCGTTGTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACGATTGTTTCATTAGCAAAAcaca                      <  2:1308453/91‑1 (MQ=255)

                                                                     aTGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAAcaca                      <  1:379555/91‑1 (MQ=255)

                                                                     aTGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAAcaca                      >  2:1517288/1‑91 (MQ=255)

                                                                      tGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACag                     <  1:3733079/91‑1 (MQ=255)

                                                                        cTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACagag                   <  1:1616437/91‑1 (MQ=255)

                                                                        cTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACagag                   >  1:2462608/1‑91 (MQ=255)

                                                                          gTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGt                 >  1:890870/1‑91 (MQ=255)

                                                                          gTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGt                 <  2:37276/91‑1 (MQ=255)

                                                                          gTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGt                 >  2:2807172/1‑91 (MQ=255)

                                                                            tATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGttt               <  1:3713633/91‑1 (MQ=255)

                                                                             aTTTTGCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGtttt              <  2:3202674/91‑1 (MQ=255)

                                                                             aTTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGtttt              >  2:894731/1‑91 (MQ=255)

                                                                             aTTTTCCATGGGGCGTTTTCATGTACGAGGCGAGGTAATTATGGCAAAAGATATGGATACAACTGTTTCATTAGCAAAACACAGAGGattt              >  2:748531/1‑91 (MQ=255)

                                                                               tttCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTtgt            >  2:33574/1‑91 (MQ=255)

                                                                                ttCCATGGGGCGTTTTCAGGTATGCGGAGGGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTtgtg           >  1:306921/1‑91 (MQ=255)

                                                                                  ccATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGtt         >  1:2196025/1‑91 (MQ=255)

                                                                                  ccATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGtt         <  1:813296/91‑1 (MQ=255)

                                                                                   cATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTc        <  1:2414415/91‑1 (MQ=255)

                                                                                   cATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTc        >  1:732545/1‑91 (MQ=255)

                                                                                    aTGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTcc       >  1:2871729/1‑91 (MQ=255)

                                                                                     tGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTccc      >  2:158216/1‑91 (MQ=255)

                                                                                      ggggCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCt     <  1:2745220/91‑1 (MQ=255)

                                                                                       gggCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCTg    >  2:2722227/1‑91 (MQ=255)

                                                                                       gggCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCTg    >  1:1935887/1‑91 (MQ=255)

                                                                                        ggCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCTgg   <  2:1708497/91‑1 (MQ=255)

                                                                                        ggCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCTgg   >  1:2222382/1‑91 (MQ=255)

CGTAACTTATTTTGTATTATATACAATTTAAAATATTAACTCGTCCCATGGAAGTAAAGCATATTTACTATGCTGTTATTTTCCATGGGGCGTTTTCATGTATGAGGAGAGGTAATTATGGCAAAAGATATGGATACAATTGTTTCATTAGCAAAACACAGAGGTTTTGTGTTCCCTGGT  >  USA300TCH1516_ALE/1676746‑1676925

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.