| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2088038 | 191 (0.940) | 22 (0.140) | 13/126 | NT | 11.6% | intergenic (+55/+40) | chp/USA300HOU_RS10560 | Chemotaxis inhibitory protein/Glycyl‑glycine endopeptidase ALE‑1 |
| ? | USA300TCH1516_ALE | = 2088052 | 185 (1.160) | intergenic (+69/+26) | chp/USA300HOU_RS10560 | Chemotaxis inhibitory protein/Glycyl‑glycine endopeptidase ALE‑1 | |||||
Only 100 of 332 total aligned reads displayed.
AATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTC > USA300TCH1516_ALE/2087948‑2088128 | ggTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGAc < 1:423081/91‑1 (MQ=255) ccTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACAtt > 2:3223438/1‑91 (MQ=255) tGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTc < 1:3721957/91‑1 (MQ=255) tGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTc < 1:3309063/91‑1 (MQ=255) ggAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCa < 2:2617416/91‑1 (MQ=255) ggAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGCTTGGCAGACATTTCa > 1:2952712/1‑91 (MQ=255) gAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCAt > 2:2417590/1‑91 (MQ=255) gAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCAt < 1:744168/91‑1 (MQ=255) gAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCAt < 2:287067/91‑1 (MQ=255) aaaaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatg < 1:915460‑M1/91‑13 (MQ=255) aaaaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATaa < 1:3451809/91‑1 (MQ=255) aaaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgt < 2:196901‑M1/91‑14 (MQ=255) aaaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgt < 1:860059‑M1/91‑14 (MQ=255) aaaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAAc > 1:1106343/1‑91 (MQ=255) aaaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAAc < 1:3769159/91‑1 (MQ=255) aaaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAAc > 2:537521/1‑91 (MQ=255) aaCTAATGAGTATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACt < 1:3798885/91‑1 (MQ=255) aCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgtct < 1:112932‑M1/91‑16 (MQ=255) cTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtg < 1:380256‑M2/91‑3 (MQ=255) tAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgc > 1:2785453‑M2/1‑88 (MQ=255) aTGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgcca < 2:434016‑M2/91‑6 (MQ=255) tGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAagttatgaaatgtctgccaa < 2:2661077‑M1/91‑21 (MQ=255) tGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaa < 1:2812893‑M2/91‑7 (MQ=255) cgaATATGCATACTAATAGTAGTTACATAAATTAAGAGGTAGATATTTCTTTTTTATATAAAGATTTGGCAGACATTTCATAACTagccaa > 2:3934233‑M2/2‑85 (MQ=255) tatGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaacct > 2:1789048‑M2/1‑81 (MQ=255) tGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaaccttt < 2:3740362‑M2/91‑13 (MQ=255) gCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaaccttta > 1:79588‑M2/1‑78 (MQ=255) cATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaacctttat < 2:1565707‑M2/91‑15 (MQ=255) aaTAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCt > 1:1603472/1‑91 (MQ=255) agtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAt < 1:2051270/91‑1 (MQ=255) gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt > 2:1780350/1‑91 (MQ=255) gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt < 2:3634547/91‑1 (MQ=255) gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt < 2:2387856/91‑1 (MQ=255) tagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTa < 1:2486393/91‑1 (MQ=255) tagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTa > 2:1381332/1‑91 (MQ=255) agtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTAt < 1:2591198/91‑1 (MQ=255) gtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATc < 1:1913976/91‑1 (MQ=255) ttACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCa < 1:1455276/91‑1 (MQ=255) ttACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCa > 2:2112186/1‑91 (MQ=255) ttACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGACAagttatgaaatgtctgccaagcctttatataaaaaagaaata < 2:1413659‑M1/91‑43 (MQ=255) aCATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCaaa > 2:2934349/1‑91 (MQ=255) cATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAAc < 1:3063763/91‑1 (MQ=255) cATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAAc < 1:2701441/91‑1 (MQ=255) cATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAAc < 2:831284/91‑1 (MQ=255) cATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTAGGCAGACAATTCATTACTtgcctaacctttatataaaaaagcaatatct < 2:3864498‑M2/91‑32 (MQ=255) aTAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACt > 1:2735183/1‑91 (MQ=255) aaaTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGc < 2:2524503/91‑1 (MQ=255) aTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCAc < 2:2821198/91‑1 (MQ=255) aaaaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTaa > 1:1691240/1‑91 (MQ=255) aaaaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTaa > 2:406328/1‑91 (MQ=255) aaaaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTaa > 1:2614436/1‑91 (MQ=255) aaaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCAcgtgc < 1:3341315/91‑5 (MQ=255) aaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAAc > 2:727965/1‑91 (MQ=255) aaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAAc < 2:2378790/91‑1 (MQ=255) aGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACt < 2:3139132/91‑1 (MQ=255) aGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACt < 2:1662913/91‑1 (MQ=255) ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACtt > 2:887951/1‑91 (MQ=255) ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACtt < 1:2344954/91‑1 (MQ=255) gTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTa > 2:1061495/1‑91 (MQ=255) gTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACAGCACTAAACTTa > 2:3286376/1‑91 (MQ=255) tAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTAc < 2:1302094/91‑1 (MQ=255) tAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTAc < 1:176421/91‑1 (MQ=255) aGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTAcc > 1:3171625/1‑91 (MQ=255) aGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTAcc > 1:2171836/1‑91 (MQ=255) aGATATTTCTTTTTTATATAAACGTTTGGTAGATATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTAcc < 2:268908/91‑1 (MQ=255) tatTTCTTCTTTATATAAAGGGCTGGCAGCCATTTCATAACTTGCCACACCTCTCTATCCCTGATTAGCAAACTGCACTAAACGTACCcaa > 2:3366042/1‑91 (MQ=255) tCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTg < 1:1161211/91‑1 (MQ=255) tCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTg > 1:2721740/1‑91 (MQ=255) cTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGc < 2:770196/91‑1 (MQ=255) tttttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCtt < 1:3521671/91‑1 (MQ=255) ttttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTa < 2:688106/91‑1 (MQ=255) ttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAtt < 2:3459657/91‑1 (MQ=255) ttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAtt > 1:1233101/1‑91 (MQ=255) atataAAGGTTTGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagta > 2:2746724‑M1/1‑16 (MQ=255) atataAAGGTTTGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagta < 2:1955860‑M1/91‑76 (MQ=255) atataAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCt < 2:1821251/91‑1 (MQ=255) tataAAGGTTTGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtat > 1:3627477‑M1/1‑15 (MQ=255) tataAAGGTTTGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtat > 2:2241067‑M1/1‑15 (MQ=255) tataAAGGTTTGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatataccttttaatttatgtaactactattagtat > 2:1560439‑M1/1‑15 (MQ=255) tataAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTa > 1:2445787/1‑91 (MQ=255) ataAAGGTTTGGCAagttatgaaatgtctgccaaaactaaaaataaaaaagaaatatctaccttttaatttatgtaactactattagtatg < 2:1857921‑M1/91‑78 (MQ=255) aaaGGTTTGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgca < 1:618569‑M1/91‑80 (MQ=255) aGGTTTGGCAGACATTTCATAACTTGCCAAACCTGTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTAcc < 2:221488/91‑1 (MQ=255) gTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTg < 2:3492654/91‑1 (MQ=255) gTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTg > 1:3865829/1‑91 (MQ=255) tttGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGc < 2:482483/91‑1 (MQ=255) ttGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttctaatttaagtaactactactagtatccatattca < 2:3427955‑M2/91‑72 (MQ=255) tGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcat < 1:1067615‑M1/91‑87 (MQ=255) tGGCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcat > 1:2347868‑M1/1‑5 (MQ=255) tGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcat < 2:2995116‑M2/91‑73 (MQ=255) tGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCt < 2:338994/91‑1 (MQ=255) ggCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatt > 2:3691785‑M1/1‑4 (MQ=255) ggCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatt < 1:620150‑M2/91‑74 (MQ=255) gCAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatta < 2:1050100‑M1/91‑89 (MQ=255) cAagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcattag > 2:2346854‑M1/1‑2 (MQ=255) cAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcattag < 1:1506867‑M2/91‑76 (MQ=255) cAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcattag < 2:1083706‑M2/91‑76 (MQ=255) cAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGt < 2:3892947/91‑1 (MQ=255) aagttatgaaatgtctgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcattagt > 2:3601917‑M1/1‑1 (MQ=255) aGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTc < 2:2270818/91‑1 (MQ=255) | AATGGTCCTGGAAAAACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTC > USA300TCH1516_ALE/2087948‑2088128 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |