BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 2088038	191 (0.940)	22 (0.140)	13/126	NT	11.6%	intergenic (+55/+40)	chp/USA300HOU_RS10560	Chemotaxis inhibitory protein/Glycyl‑glycine endopeptidase ALE‑1
*	?	USA300TCH1516_ALE	= 2088052	185 (1.160)	22 (0.140)	13/126	NT	11.6%	intergenic (+69/+26)	chp/USA300HOU_RS10560	Chemotaxis inhibitory protein/Glycyl‑glycine endopeptidase ALE‑1

Only 100 of 266 total aligned reads displayed.

AACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTC  >  USA300TCH1516_ALE/2087962‑2088141

aaCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACt                                                                                           <  1:2682070/91‑1 (MQ=255)

 aCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTt                                                                                          >  2:3601917‑M2/1‑90 (MQ=255)

 aCTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTt                                                                                          >  2:3861880‑M2/1‑90 (MQ=255)

     aTGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgcca                                                                                      >  1:2347868‑M2/1‑86 (MQ=255)

       gAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaa                                                                                    <  2:404271‑M2/91‑8 (MQ=255)

       gAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaa                                                                                    <  2:2279492‑M2/91‑8 (MQ=255)

         atatGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaacc                                                                                  <  2:501949‑M2/91‑10 (MQ=255)

          tatGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaacct                                                                                 >  2:1789048‑M2/1‑81 (MQ=255)

             gCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaaccttta                                                                              >  1:79588‑M2/1‑78 (MQ=255)

              cATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaacctttat                                                                             <  2:1565707‑M2/91‑15 (MQ=255)

              cATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaacctttat                                                                             >  1:3799831‑M2/1‑77 (MQ=255)

               aTACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTtgccaaacctttata                                                                            >  1:3627477‑M2/1‑76 (MQ=255)

                  cTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTatatat                                                                         >  2:2637589/1‑91 (MQ=255)

                    aaTAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCt                                                                       >  2:1097771/1‑91 (MQ=255)

                    aaTAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCt                                                                       >  1:2053886/1‑91 (MQ=255)

                       agtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAt                                                                    >  1:1159045/1‑91 (MQ=255)

                        gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt                                                                   <  1:1913795/91‑1 (MQ=255)

                        gtagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAAtt                                                                   <  2:2387856/91‑1 (MQ=255)

                         tagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTa                                                                  >  2:1380104/1‑91 (MQ=255)

                         tagtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTa                                                                  <  1:2486393/91‑1 (MQ=255)

                          agtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTAt                                                                 <  1:2591199/91‑1 (MQ=255)

                          agtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTAt                                                                 <  2:2392578/91‑1 (MQ=255)

                          agtTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTAt                                                                 >  1:149065/1‑91 (MQ=255)

                            ttACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCa                                                               >  2:2112186/1‑91 (MQ=255)

                              aCATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCAAAACCTTTATATATCTAATTATCaaa                                                             >  2:3865585/1‑91 (MQ=255)

                               cATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAAc                                                            <  1:3063763/91‑1 (MQ=255)

                                aTAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACt                                                           >  1:2735212/1‑91 (MQ=255)

                                aTAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCACAACTTGCCAAACCTTTATATATCTAATTATCAAACt                                                           >  2:3909599/1‑91 (MQ=255)

                                  aaaTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGc                                                         <  2:2524503/91‑1 (MQ=255)

                                  aaaTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGc                                                         <  1:1084058/91‑1 (MQ=255)

                                    aTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCAc                                                       <  1:1754580/91‑1 (MQ=255)

                                    aTTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCAc                                                       <  2:2821198/91‑1 (MQ=255)

                                       aaaaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTaa                                                    >  1:2614436/1‑91 (MQ=255)

                                       aaaaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTaa                                                    >  1:1691240/1‑91 (MQ=255)

                                         aaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAAc                                                  <  2:2378790/91‑1 (MQ=255)

                                         aaGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAAc                                                  >  2:727965/1‑91 (MQ=255)

                                          aGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACt                                                 <  2:3139132/91‑1 (MQ=255)

                                           ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACtt                                                <  1:2344749/91‑1 (MQ=255)

                                           ggTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACtt                                                <  1:3317069/91‑1 (MQ=255)

                                            gTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACAGCACTAAACTTa                                               >  2:3286376/1‑91 (MQ=255)

                                            gTAGATATTTCCTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTa                                               >  2:170433/1‑91 (MQ=255)

                                             tAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTAc                                              <  1:3713244/91‑1 (MQ=255)

                                             tAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTAc                                              <  2:1302094/91‑1 (MQ=255)

                                              aGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTAcc                                             <  1:1601735/91‑1 (MQ=255)

                                              aGATATGTCTTTTTTATATAAAGGTTTGGCAAACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTAcc                                             <  2:268953/91‑1 (MQ=255)

                                                atatTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaa                                           <  1:89693/91‑1 (MQ=255)

                                                 tatTTCTTCTTTATATAAAGGGCTGGCAGCCATTTCATAACTTGCCACACCTCTCTATCCCTGATTAGCAAACTGCACTAAACGTACCcaa                                          >  2:3366042/1‑91 (MQ=255)

                                                  atTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaaaa                                         <  1:1179588/91‑1 (MQ=255)

                                                  atTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCaaaa                                         <  1:2004078/91‑1 (MQ=255)

                                                    ttCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACt                                       <  2:1965544/91‑1 (MQ=255)

                                                     tCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTg                                      >  2:2776498/1‑91 (MQ=255)

                                                      cTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGc                                     <  2:3657987/91‑1 (MQ=255)

                                                      cTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGc                                     >  1:2803183/1‑91 (MQ=255)

                                                      cTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGc                                     <  2:770196/91‑1 (MQ=255)

                                                        tttttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCtt                                   <  1:3521671/91‑1 (MQ=255)

                                                         ttatatataAAGGTTTTGCAGACATTTCATAACTTGCCAATCCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTa                                  <  2:2885508/88‑1 (MQ=255)

                                                           ttATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTAtt                                <  2:3459657/91‑1 (MQ=255)

                                                            tatataAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTc                               <  1:3495767/91‑1 (MQ=255)

                                                             atataAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCt                              <  2:1821251/91‑1 (MQ=255)

                                                             atataAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCt                              <  1:2469661/91‑1 (MQ=255)

                                                              tataAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTa                             >  2:467257/1‑91 (MQ=255)

                                                                taAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTAtt                           >  1:966895/1‑91 (MQ=255)

                                                                 aaaGGTTTGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgca                          <  1:3836472‑M2/91‑66 (MQ=255)

                                                                   aGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTAcc                        >  1:2727068/1‑91 (MQ=255)

                                                                    ggTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCt                       <  2:1784327/91‑1 (MQ=255)

                                                                     gTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTg                      <  2:833100/91‑1 (MQ=255)

                                                                     gTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTg                      <  2:3492654/91‑1 (MQ=255)

                                                                      tttGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattc                     <  1:3347588‑M2/91‑71 (MQ=255)

                                                                      tttGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGc                     <  2:2228719/91‑1 (MQ=255)

                                                                       ttGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattca                    <  2:2661077‑M2/91‑72 (MQ=255)

                                                                       ttGGCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttctaatttaagtaactactactagtatccatattca                    <  2:3427955‑M2/91‑72 (MQ=255)

                                                                        tGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCt                   <  2:338994/91‑1 (MQ=255)

                                                                        tGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCt                   >  2:2945148/1‑91 (MQ=255)

                                                                        tGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCt                   >  1:1235899/1‑91 (MQ=255)

                                                                         ggCAGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcatt                  <  1:620150‑M2/91‑74 (MQ=255)

                                                                          gCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTg                 >  1:2708571/1‑91 (MQ=255)

                                                                           cAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGt                <  2:420612/91‑1 (MQ=255)

                                                                           cAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGt                <  2:1656619/91‑1 (MQ=255)

                                                                           cAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGt                <  2:1913186/91‑1 (MQ=255)

                                                                            aGACATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcattagt               <  2:899442‑M2/91‑77 (MQ=255)

                                                                            aGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTc               <  2:2270804/91‑1 (MQ=255)

                                                                             gACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCt              >  2:2742793/1‑91 (MQ=255)

                                                                             gACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCt              >  2:1849935/1‑91 (MQ=255)

                                                                              aCATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcattagttt             <  2:1051391‑M2/91‑79 (MQ=255)

                                                                              aCATTTCATAACTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcattagttt             <  2:1408047‑M2/91‑79 (MQ=255)

                                                                              aCATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTa             >  1:1057060/1‑91 (MQ=255)

                                                                               cATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTAc            >  1:678656/1‑91 (MQ=255)

                                                                               cATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTAc            <  2:653549/91‑1 (MQ=255)

                                                                                aTTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTAcc           <  2:2074840/91‑1 (MQ=255)

                                                                                  ttCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACctc         <  1:481309/91‑1 (MQ=255)

                                                                                   tCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACctct        >  1:730996/1‑91 (MQ=255)

                                                                                   tCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACctct        <  1:3083559/91‑1 (MQ=255)

                                                                                   tCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACctct        <  1:2547114/91‑1 (MQ=255)

                                                                                     aTAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTcc      >  2:1432519/1‑91 (MQ=255)

                                                                                      tAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCt     >  1:2841687/1‑91 (MQ=255)

                                                                                      tAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCt     >  1:2246344/1‑91 (MQ=255)

                                                                                         cTtgccaaacctttatataaaaaagaaatatctaccttttaatttatgtaactactattagtatgcatattcattagtttttccaggacca  <  1:2334851‑M2/91‑90 (MQ=255)

                                                                                         cTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTc  <  1:2927866/91‑1 (MQ=255)

                                                                                         cTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTc  <  1:1511715/91‑1 (MQ=255)

                                                                                         cTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTc  >  2:323799/1‑91 (MQ=255)

AACTAATGAATATGCATACTAATAGTAGTTACATAAATTAAAAGGTAGATATTTCTTTTTTATATAAAGGTTTGGCAGACATTTCATAACTTGCCAAACCTTTATATATCTAATTATCAAACTGCACTAAACTTACCAAAACTGCTTATTCTATTACCTGCCTTGTCTACCTCTCCTGTC  >  USA300TCH1516_ALE/2087962‑2088141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.