BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2141638 =	203 (1.000)	13 (0.070)	7/148	NT	6.8%	coding (450/1617 nt)	groL	60 kDa chaperonin
*	?	USA300TCH1516_ALE	2141666 =	168 (0.890)	13 (0.070)	7/148	NT	6.8%	coding (422/1617 nt)	groL	60 kDa chaperonin

Only 100 of 256 total aligned reads displayed.

TCCATTTGATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTG  >  USA300TCH1516_ALE/2141548‑2141728

tCCATTTGATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATctgctgct                                                                                            <  1:1057634/91‑1 (MQ=255)

 ccagttggtttacgacaaggtatcgacaaagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTg                                                                                           >  1:719492‑M1/90‑91 (MQ=255)

 ccagttggtttacgacaaggtatcgacaaagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTg                                                                                           >  2:1635987‑M1/90‑91 (MQ=255)

 ccATTTGATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATctgctgctg                                                                                           <  1:3536374/91‑1 (MQ=255)

   agttggtttacgacaaggtatcgacaaagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGaa                                                                                         <  2:1844366‑M1/4‑1 (MQ=255)

    tttGATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAACTATAACGTCCAATTTCTTCATCTGCTGCTGcaa                                                                                        >  1:2325477/1‑91 (MQ=255)

    tttGATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGaaa                                                                                        <  1:277487/91‑1 (MQ=255)

    tttCATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGaaa                                                                                        <  1:3183313/91‑1 (MQ=255)

     ttgatttacgacaaggtatcgacaaagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAAt                                                                                       <  2:1989970‑M1/6‑1 (MQ=255)

       gATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCg                                                                                     <  1:3914081/91‑1 (MQ=255)

       gATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCg                                                                                     >  2:3540023/1‑91 (MQ=255)

        aTTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGc                                                                                    <  2:2647112/91‑1 (MQ=255)

         ttcttcAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCa                                                                                   >  2:3452313/1‑91 (MQ=255)

              cAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTAc                                                                              <  1:1475788/91‑1 (MQ=255)

               aaTTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACt                                                                             >  1:1410516/1‑91 (MQ=255)

                 ttGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTg                                                                           >  2:342855/1‑91 (MQ=255)

                  tGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTgc                                                                          >  1:3743347/1‑91 (MQ=255)

                  tGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTgc                                                                          <  1:715015/91‑1 (MQ=255)

                  tGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTgc                                                                          <  1:715063/91‑1 (MQ=255)

                     tatcgacaaagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCa                                                                       >  1:1754571‑M1/70‑91 (MQ=255)

                     aaTGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCa                                                                       <  2:2579505/91‑1 (MQ=255)

                      atcgacaaagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCaa                                                                      >  1:461401‑M1/69‑91 (MQ=255)

                      aTGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCaa                                                                      >  1:530957/1‑91 (MQ=255)

                        gACACCATCGTTACCTACTTTTTTTTTTTTTTTTTAACTATAACGTCCAATTTCTTCTTCTGCTGCTGTAGTCGCCCCTACTTGCGCCAtt                                                                    >  2:599500/1‑91 (MQ=255)

                        gACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAAtt                                                                    >  2:3100595/1‑91 (MQ=255)

                        cgacaaagcagttaaagttgctgttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAAtt                                                                    >  2:1608210‑M1/67‑91 (MQ=255)

                         acacCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAAttt                                                                   <  1:1253023/91‑1 (MQ=255)

                         acacCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAAttt                                                                   >  1:1938214/1‑91 (MQ=255)

                           acCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCa                                                                 >  2:914817/1‑91 (MQ=255)

                            ccATCGTTACCTACTTTTTCCATTGCTTCAGAAATATAACGTCCAATTTCTTCAGCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAt                                                                <  2:1174350/91‑1 (MQ=255)

                             cATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTGCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtt                                                               <  2:3476074/91‑1 (MQ=255)

                             cATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtt                                                               <  2:1212093/91‑1 (MQ=255)

                             cATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtt                                                               <  1:1036724/91‑1 (MQ=255)

                              aTCGTTACCTACGTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAttt                                                              <  2:3285035/91‑1 (MQ=255)

                               tCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtttt                                                             <  1:1262676/91‑1 (MQ=255)

                               tCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtttt                                                             <  2:2277457/91‑1 (MQ=255)

                               tCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtttt                                                             <  2:2754248/91‑1 (MQ=255)

                                cGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAttttt                                                            <  2:1002419/91‑1 (MQ=255)

                                cGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAttttt                                                            <  2:999744/91‑1 (MQ=255)

                                cGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAttttt                                                            >  1:1994578/1‑91 (MQ=255)

                                  ttACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCACACCTACTTGCGCAATTTCATTTTTAt                                                          >  1:2688341/1‑91 (MQ=255)

                                     ccTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTAtttt                                                       <  1:578060/91‑1 (MQ=255)

                                     ccTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTAtttt                                                       <  1:2924986/91‑1 (MQ=255)

                                     ccTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTAtttt                                                       <  1:820855/91‑1 (MQ=255)

                                      cTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTc                                                      <  1:2026726/91‑1 (MQ=255)

                                       tACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCa                                                     <  2:1302554/91‑1 (MQ=255)

                                         cTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAAc                                                   <  2:3948971/91‑1 (MQ=255)

                                           ttttCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACtt                                                 >  2:2651774/1‑91 (MQ=255)

                                             ttCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACtttt                                               <  1:1606639/91‑1 (MQ=255)

                                              tCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTCCGCAATTTCATTTTTATTTTCAACttttt                                              >  1:3172187/1‑91 (MQ=255)

                                               ccATATCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTg                                             >  2:1078968/1‑91 (MQ=255)

                                               ccATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTg                                             <  1:1102943/91‑1 (MQ=255)

                                               ccATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTg                                             <  1:2635824/91‑1 (MQ=255)

                                               ccATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTg                                             >  2:1521330/1‑91 (MQ=255)

                                               ccATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTg                                             <  1:1883024/91‑1 (MQ=255)

                                               ccATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTg                                             <  1:1875469/91‑1 (MQ=255)

                                                cATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCGATTTCATTTTTATTTTCAACTTTTTga                                            <  2:1290558/91‑1 (MQ=255)

                                                 gtAGCTTCAGAAGTATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTGTTgag                                           <  2:724554/90‑1 (MQ=255)

                                                 aTAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgag                                           <  2:3045664/91‑1 (MQ=255)

                                                 aTAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgag                                           <  2:2697601/91‑1 (MQ=255)

                                                 aTAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgag                                           >  1:2451688/1‑91 (MQ=255)

                                                  tAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgaga                                          <  1:2365264/91‑1 (MQ=255)

                                                   aGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGaa                                         >  1:2465537/1‑91 (MQ=255)

                                                     cTTCAGAGATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAAtt                                       <  1:1957202/91‑1 (MQ=255)

                                                     cTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAAtt                                       >  1:334335/1‑91 (MQ=255)

                                                       tCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAAtttt                                     >  2:3144342/1‑91 (MQ=255)

                                                             atatAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTa                               <  2:891699/91‑1 (MQ=255)

                                                             atatAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTa                               <  2:760054/91‑1 (MQ=255)

                                                              tataACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTaa                              <  2:533054/91‑1 (MQ=255)

                                                              tataACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTaa                              <  1:323985/91‑1 (MQ=255)

                                                               ataACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAAc                             >  2:1432919/1‑91 (MQ=255)

                                                               ataACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAAc                             <  2:3319479/91‑1 (MQ=255)

                                                                taACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACg                            >  1:2194226/1‑91 (MQ=255)

                                                                 aaCGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGc                           <  1:2510888/91‑1 (MQ=255)

                                                                 aaCGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGc                           <  2:2359780/91‑1 (MQ=255)

                                                                 aaCGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGc                           >  2:2985637/1‑91 (MQ=255)

                                                                 aaCGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGc                           <  1:2382552/91‑1 (MQ=255)

                                                                  aCGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCt                          <  2:279786/91‑1 (MQ=255)

                                                                  aCGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCt                          <  2:195160/91‑1 (MQ=255)

                                                                   cGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCtt                         >  2:922610/1‑91 (MQ=255)

                                                                    gTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTc                        <  1:2914083/91‑1 (MQ=255)

                                                                    gTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTc                        <  2:3843554/91‑1 (MQ=255)

                                                                    gTCCAATTTATTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTTAACTTTTTGAGATTTTTCATGTAACGCttt                        >  2:688869/1‑90 (MQ=255)

                                                                      ccAATTTCTTCATCTGCTGCTGAAATCGCACCTACATGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCaa                      >  1:1268658/1‑91 (MQ=255)

                                                                         aTTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAg                   <  2:2602152/91‑1 (MQ=255)

                                                                          tttCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGc                  <  2:61874/91‑1 (MQ=255)

                                                                          tttCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGc                  <  1:2747012/91‑1 (MQ=255)

                                                                            tcttcATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTGCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCaa                <  2:169310/91‑1 (MQ=255)

                                                                             cttcATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAAc               <  1:3825329/91‑1 (MQ=255)

                                                                              ttcATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACt              <  2:3771626/91‑1 (MQ=255)

                                                                              ttcATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACt              <  2:2023391/91‑1 (MQ=255)

                                                                              ttcAGCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCCACt              >  1:3120706/1‑91 (MQ=255)

                                                                                 aTCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTa           >  1:3118113/1‑91 (MQ=255)

                                                                                    tgctgctgAAATCGGACCTTCTTGCGCAGTTTCATTTTTATTTTCAGTTTTTTGAGAATCTTCATGTAACGCTTCACCAGCAACTTTaagt        >  2:2446838/1‑89 (MQ=255)

                                                                                      ctgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGc      <  2:1818741/91‑1 (MQ=255)

                                                                                      ctgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGc      <  1:3629222/91‑1 (MQ=255)

                                                                                      ctgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAAATTTTTGAGAATTTTCATGTAACGCTTCAACAGAAACTTTAACTGc      >  1:1360153/1‑91 (MQ=255)

                                                                                       tgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCt     >  2:2090550/1‑91 (MQ=255)

                                                                                       tgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCt     <  1:986876/91‑1 (MQ=255)

                                                                                          TGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTg  <  1:2110656‑M1/91‑1 (MQ=255)

TCCATTTGATTCTTCAATTGTAATGACACCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTG  >  USA300TCH1516_ALE/2141548‑2141728

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.