New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? USA300TCH1516_ALE 2141638 =203 (1.000)13 (0.070) 7/148 NT 6.8% coding (450/1617 nt) groL 60 kDa chaperonin
?USA300TCH1516_ALE 2141666 = 168 (0.890)coding (422/1617 nt) groL 60 kDa chaperonin

Only 100 of 252 total aligned reads displayed.

CCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGGT  >  USA300TCH1516_ALE/2141576‑2141756
                                                                                          |                                                                                          
 cATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtt                                                                                           <  2:121128/91‑1 (MQ=255)
 cATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtt                                                                                           <  1:1036724/91‑1 (MQ=255)
 aagcagttaaagttgcggttgaagcgttacatgaaaattctcaaaaagttgaaaataaaaaTGAAATCGCACCTACTTGCGCAATTTCAtt                                                                                           >  2:3030071‑M1/62‑91 (MQ=255)
   tCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtttt                                                                                         <  1:1262676/91‑1 (MQ=255)
   tCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtttt                                                                                         >  1:3485211/1‑91 (MQ=255)
   tCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAtttt                                                                                         <  2:604510/91‑1 (MQ=255)
    cGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAttttt                                                                                        <  2:999744/91‑1 (MQ=255)
    cGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCAttttt                                                                                        >  1:1994578/1‑91 (MQ=255)
      ttACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTAt                                                                                      >  1:878843/1‑91 (MQ=255)
         ccTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTAtttt                                                                                   <  1:2924986/91‑1 (MQ=255)
         ccTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTAtttt                                                                                   <  1:578060/91‑1 (MQ=255)
          cTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTc                                                                                  <  1:2026726/91‑1 (MQ=255)
           tACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATGTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCa                                                                                 <  1:3136140/91‑1 (MQ=255)
               ttttCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACtt                                                                             >  2:2651774/1‑91 (MQ=255)
                 ttCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACtttt                                                                           <  1:1606639/91‑1 (MQ=255)
                  tCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACttttt                                                                          <  2:1151975/91‑1 (MQ=255)
                  tCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTCCGCAATTTCATTTTTATTTTCAACttttt                                                                          >  1:3172187/1‑91 (MQ=255)
                   ccATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTg                                                                         >  2:1521330/1‑91 (MQ=255)
                   ccATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTg                                                                         <  1:2635824/91‑1 (MQ=255)
                   ccATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTg                                                                         <  1:246802/91‑1 (MQ=255)
                   ccATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTg                                                                         <  1:1875609/91‑1 (MQ=255)
                     gtAGCTTCAGAAGTATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTGTTgag                                                                       <  2:724554/90‑1 (MQ=255)
                     aTAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgag                                                                       >  1:2451688/1‑91 (MQ=255)
                     aTAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgag                                                                       <  2:3045664/91‑1 (MQ=255)
                      tAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTgaga                                                                      <  1:2365264/91‑1 (MQ=255)
                          ttCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAAttt                                                                  >  1:3225604/1‑91 (MQ=255)
                           tCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAAtttt                                                                 >  2:3144342/1‑91 (MQ=255)
                               aaaTATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATg                                                             <  1:3575848/91‑1 (MQ=255)
                                aaTATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCagag                                                            >  1:3741188/1‑88 (MQ=255)
                                 atatAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTa                                                           <  2:760054/91‑1 (MQ=255)
                                 atatAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTa                                                           <  2:891699/91‑1 (MQ=255)
                                   ataACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAAc                                                         >  2:1432919/1‑91 (MQ=255)
                                   ataACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAAc                                                         <  2:3319479/91‑1 (MQ=255)
                                    taACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACg                                                        >  1:2194226/1‑91 (MQ=255)
                                     aaCGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGc                                                       <  2:3906345/91‑1 (MQ=255)
                                     aaCGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGc                                                       <  1:2382552/91‑1 (MQ=255)
                                     aaCGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGc                                                       <  1:2510888/91‑1 (MQ=255)
                                      aCGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCt                                                      <  2:279786/91‑1 (MQ=255)
                                       cGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCtt                                                     >  2:922610/1‑91 (MQ=255)
                                       cGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCtt                                                     >  2:3526735/1‑91 (MQ=255)
                                        gTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTc                                                    <  1:2914083/91‑1 (MQ=255)
                                         tCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCa                                                   <  1:415271/91‑1 (MQ=255)
                                          ccAATTTCTTCATCTGCTGCTGAAATCGCACCTACATGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCaa                                                  >  1:1268658/1‑91 (MQ=255)
                                             aTTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAg                                               <  2:2602152/91‑1 (MQ=255)
                                              tttCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGc                                              <  1:2747012/91‑1 (MQ=255)
                                                  ttcATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACt                                          <  2:3771626/91‑1 (MQ=255)
                                                   tcATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACtt                                         <  2:23767/91‑1 (MQ=255)
                                                   tcATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACtt                                         <  2:2317156/91‑1 (MQ=255)
                                                   ggaTCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACtt                                         <  1:324464/89‑1 (MQ=255)
                                                     aTCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTa                                       >  1:3118113/1‑91 (MQ=255)
                                                       ctgctgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAAc                                     <  2:1224501/91‑1 (MQ=255)
                                                       ctgctgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAAc                                     <  2:2879163/91‑1 (MQ=255)
                                                        tgctgctgAAATCGGACCTTCTTGCGCAGTTTCATTTTTATTTTCAGTTTTTTGAGAATCTTCATGTAACGCTTCACCAGCAACTTTaagt                                    >  2:2446838/1‑89 (MQ=255)
                                                        tgctgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACt                                    >  1:464715/1‑91 (MQ=255)
                                                          ctgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGc                                  <  2:1818549/91‑1 (MQ=255)
                                                          ctgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGc                                  <  2:1019656/91‑1 (MQ=255)
                                                          ctgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGc                                  >  1:3817197/1‑91 (MQ=255)
                                                          ctgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAAATTTTTGAGAATTTTCATGTAACGCTTCAACAGAAACTTTAACTGc                                  >  1:1360153/1‑91 (MQ=255)
                                                           tgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCt                                 <  1:986876/91‑1 (MQ=255)
                                                           tgctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCt                                 >  2:2090550/1‑91 (MQ=255)
                                                            gctgAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCtt                                <  2:1927298/91‑1 (MQ=255)
                                                            aatgaaattgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCtt                                >  1:3895966‑M2/31‑91 (MQ=255)
                                                            aatgaaattgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCtt                                >  1:540292‑M2/31‑91 (MQ=255)
                                                            aatgaaattgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCtt                                >  2:659242‑M2/31‑91 (MQ=255)
                                                              TGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTg                              <  1:2110656‑M1/91‑1 (MQ=255)
                                                              TGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAACAACTTTAACTGCTTTg                              >  2:3097703‑M1/1‑91 (MQ=255)
                                                               GAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGt                             <  2:629703‑M1/91‑1 (MQ=255)
                                                               GAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGt                             >  2:1269456‑M1/1‑91 (MQ=255)
                                                                 aattgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCg                           >  2:1608210‑M2/26‑91 (MQ=255)
                                                                 AATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCg                           <  1:733635‑M1/91‑1 (MQ=255)
                                                                  ATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGa                          <  2:2268561‑M1/91‑1 (MQ=255)
                                                                  ATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATCTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGa                          <  2:3474221‑M1/91‑1 (MQ=255)
                                                                   TCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTCTGTCGAt                         <  1:1957198‑M1/91‑1 (MQ=255)
                                                                    tgcgcaagtaggtgcgatttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATa                        >  1:1754571‑M2/23‑91 (MQ=255)
                                                                     gCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATAc                       <  2:269712/91‑1 (MQ=255)
                                                                     gCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATAc                       <  2:269891/91‑1 (MQ=255)
                                                                         cTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTg                   >  2:2089720/1‑91 (MQ=255)
                                                                         cTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTg                   >  1:1978132/1‑91 (MQ=255)
                                                                         cTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTg                   >  1:297179/1‑91 (MQ=255)
                                                                         cTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTg                   <  1:1715013/91‑1 (MQ=255)
                                                                           aCTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTc                 <  2:414354/91‑1 (MQ=255)
                                                                           aCTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTc                 <  2:3179849/91‑1 (MQ=255)
                                                                             ttGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGt               <  1:7860/91‑1 (MQ=255)
                                                                              tGCGCAATTTCATTTTTATTTTCAACTTTTTTTTTTTTTTTTTGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTCTCGtt              >  2:517812/1‑90 (MQ=255)
                                                                               gcgcAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTaa             >  1:1101765/1‑91 (MQ=255)
                                                                                cgcAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACGGCTTTGTCGATACCTTGTCGTaga            <  2:1328301/91‑3 (MQ=255)
                                                                                  cAATTTCATTTTTATTTTCAACTTTTTTTGATTTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAAcc          >  2:533959/1‑91 (MQ=255)
                                                                                   aaTTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCa         >  1:2411605/1‑91 (MQ=255)
                                                                                    atttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAATCaa        <  2:1990376‑M2/85‑1 (MQ=255)
                                                                                    atttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAATCaa        <  2:1989970‑M2/85‑1 (MQ=255)
                                                                                     tttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAAc       <  2:1685929‑M2/86‑1 (MQ=255)
                                                                                     tttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAAc       <  2:1293195‑M2/86‑1 (MQ=255)
                                                                                      ttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACt      >  1:1935589‑M2/5‑91 (MQ=255)
                                                                                      ttcaTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACt      <  2:1844366‑M2/87‑1 (MQ=255)
                                                                                      ttCATTTTTATTTTCAGCTTTTTGAGAAGTTTGATGTGGCGCTTCAGCAGCAACTTTGACTGCTTTGTCGATACCTTGTCGTAAGCCAACt      <  2:2275881/91‑1 (MQ=255)
                                                                                        caTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTgg    >  1:2647591‑M2/3‑91 (MQ=255)
                                                                                        caTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTgg    >  1:719377‑M2/3‑91 (MQ=255)
                                                                                        caTTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTgg    >  1:1253474‑M2/3‑91 (MQ=255)
                                                                                          tttttATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTACCTGCTTTGTCGATACCTTGTCGTAAACCAACTGGGt  >  1:1492578/1‑91 (MQ=255)
                                                                                          tttttATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGGt  >  1:499250/1‑91 (MQ=255)
                                                                                          |                                                                                          
CCATCGTTACCTACTTTTTCCATAGCTTCAGAAATATAACGTCCAATTTCTTCATCTGCTGCTGAAATCGCACCTACTTGCGCAATTTCATTTTTATTTTCAACTTTTTGAGAATTTTCATGTAACGCTTCAACAGCAACTTTAACTGCTTTGTCGATACCTTGTCGTAAACCAACTGGGT  >  USA300TCH1516_ALE/2141576‑2141756

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.