| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2143383 | 129 (0.630) | 22 (0.130) | 11/132 | NT | 17.0% | intergenic (+18/+7) | USA300HOU_RS10935/USA300HOU_RS10940 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2143399 | 109 (0.650) | coding (1245/1254 nt) | USA300HOU_RS10940 | hypothetical protein | |||||
Only 100 of 312 total aligned reads displayed.
ATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCAT > USA300TCH1516_ALE/2143293‑2143473 | ttACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATcacac < 2:1199468/91‑1 (MQ=255) tACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATcacaca < 2:2561072/91‑1 (MQ=255) aCTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCacacac > 1:472665/1‑91 (MQ=255) cTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACg > 1:2276840/1‑91 (MQ=255) cTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACg > 1:3663357/1‑91 (MQ=255) cTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACg < 2:468910/91‑1 (MQ=255) tAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGa < 1:2606456/91‑1 (MQ=255) aaTCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGAt > 1:2081595/1‑91 (MQ=255) aTCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGAtt > 1:2427676/1‑91 (MQ=255) aTCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGAtt < 2:1134581/91‑1 (MQ=255) tCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTa < 2:3637410/91‑1 (MQ=255) ccTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAt < 2:1431778/91‑1 (MQ=255) gAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAtcgt > 1:1470680/1‑91 (MQ=255) gAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATGCCATAAAAAAAAAAACGAATCACACACGGATTAtcgt < 2:2005093/91‑1 (MQ=255) aGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAtcgtc > 2:2757926/1‑91 (MQ=255) ggCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAtcgtcg < 1:219060/91‑1 (MQ=255) tatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGc > 2:638764‑M1/62‑91 (MQ=255) gCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGc > 2:1640297/1‑91 (MQ=255) gCTTTGAAAAAAGCCACGAAACAAGCGAATTTTATATATCACATTTTTATACCAAAATAAAAAAAACGAATCACAgcgacgataatccgtg < 2:1221462‑M1/91‑17 (MQ=255) cTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAgcgacgataatccgtgt < 2:1722304‑M1/91‑18 (MQ=255) cTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCt > 2:1200369‑M2/1‑90 (MQ=255) tgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCtg > 1:1088851‑M1/60‑91 (MQ=255) gatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCtgt > 1:646842‑M1/59‑91 (MQ=255) tGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtg < 2:74373‑M2/91‑5 (MQ=255) gAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtga > 2:1296794‑M2/1‑86 (MQ=255) gAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtga < 2:1768758‑M2/91‑6 (MQ=255) ttcaaagccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgat < 1:3133773‑M2/88‑7 (MQ=255) aaaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAACGTCGCtgtgat > 1:3036886‑M2/1‑85 (MQ=255) aaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAgcgacgataatccgtgtgtgatt < 1:1765421‑M1/91‑24 (MQ=255) aaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgatt < 1:3201121‑M2/91‑8 (MQ=255) aaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAgcgacgataatccgtgtgtgattcg < 2:2640345‑M1/91‑26 (MQ=255) aaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcg < 1:3438266‑M2/91‑10 (MQ=255) aaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgt < 2:1450414‑M2/91‑11 (MQ=255) aaGCCACGGAACAAGCGAATTTTATATATCACATTTATATTCCATAATAAAAAAAACGAATCACAgcgacgataatccgtgtgtgattcgt < 2:3905196‑M1/91‑27 (MQ=255) tattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGtt > 1:1516269‑M1/51‑91 (MQ=255) aGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgtt < 2:3407913‑M2/91‑12 (MQ=255) gCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgttt < 1:3344975‑M2/91‑13 (MQ=255) gCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgttt < 2:1025741‑M2/91‑13 (MQ=255) gCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgttt < 1:503662‑M2/91‑13 (MQ=255) ccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACAgcgacgataatccgtgtgtgattcgtttt < 1:1724005‑M1/91‑30 (MQ=255) ccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgtttt > 2:3801228‑M2/1‑78 (MQ=255) ccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgtttt > 1:3826027‑M2/1‑78 (MQ=255) cGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAt < 1:2973164/91‑1 (MQ=255) cGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAt < 1:810854/91‑1 (MQ=255) gAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAttt < 1:1906092/91‑1 (MQ=255) aCAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAttttt > 1:2947996/1‑91 (MQ=255) cAAGCGAATTTTATATATCACATTTTTATTCCATAAGAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTc < 2:3119033/91‑1 (MQ=255) aaGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGGTTATCGTCGCTGTGATTCGTTTTTATTTTTCt > 1:1264523/1‑91 (MQ=255) aGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCtt < 2:3040812/91‑1 (MQ=255) gCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCttt > 1:3273274/1‑91 (MQ=255) cGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCtttt < 2:2002673/91‑1 (MQ=255) aaTTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTa > 2:3932477/1‑91 (MQ=255) aaTTTTATATATCACATGTTTATTCCATAATATAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTa < 1:3388318/91‑1 (MQ=255) ttttATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAtt < 2:2280903/91‑1 (MQ=255) ttATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTc > 1:1404797/1‑91 (MQ=255) ttATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCCTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTc > 2:344653/1‑91 (MQ=255) tatataTCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGGTTCGTTTTTATTTTTTTTTTTATTTCg > 1:2892021/1‑91 (MQ=255) atatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCtt > 1:1504633/1‑91 (MQ=255) tCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCTCTTTat > 2:3835122/1‑90 (MQ=255) aTTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAAt > 1:75023/1‑91 (MQ=255) tATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTAGTTTTTATTTTTCATTTTATTTCGCTTTACAAATAAGaa > 1:3675316/1‑91 (MQ=255) aTTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAAt > 2:2370736/1‑91 (MQ=255) ttCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATa > 1:1621018/1‑91 (MQ=255) ccATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc > 2:3883815/1‑91 (MQ=255) ataaaaAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCAt < 2:2948503/91‑1 (MQ=255) ataaAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGAt < 1:3900716/91‑1 (MQ=255) ataaAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGAt < 1:2680707/91‑1 (MQ=255) aaaaaaaaCGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTg > 1:1026575/1‑91 (MQ=255) AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa < 2:828034‑M1/91‑1 (MQ=255) AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa > 1:123559‑M1/1‑91 (MQ=255) AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa < 1:217838‑M1/91‑1 (MQ=255) AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa < 1:2463703‑M1/91‑1 (MQ=255) AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa > 2:2095419‑M1/1‑91 (MQ=255) AAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAAt > 1:3313531‑M1/1‑91 (MQ=255) AAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAAt < 2:3346271‑M1/91‑1 (MQ=255) AACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATa > 2:3500053‑M1/1‑91 (MQ=255) aCGAATCACACACGGATTATCGTCGCtgtgattcgttctttttattctggaataaaaatctgatatataaaattcgcttgttccgtggctt < 1:3159557‑M2/91‑66 (MQ=255) ACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATac > 1:167489‑M1/1‑91 (MQ=255) ACGAATCACACACGGATTATCGTCGCAGTGAGTCTTTTCTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCAGGATTGAAaatgc < 1:177951‑M1/91‑3 (MQ=255) cGAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttt < 1:251792‑M1/91‑83 (MQ=255) CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacc < 1:3490536‑M1/91‑1 (MQ=255) CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacc < 2:3282471‑M1/91‑1 (MQ=255) gAATCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggctttt > 2:839216‑M1/1‑8 (MQ=255) AATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccac < 1:3434731‑M1/91‑1 (MQ=255) aTCACGgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggctttgaa < 2:1542840‑M1/91‑86 (MQ=255) aTCACACACGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggctttttt < 1:17021‑M2/91‑70 (MQ=255) aTCACACACGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggctttttt < 1:2212905‑M2/91‑70 (MQ=255) aTCAAAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggctttttt > 1:3119014‑M1/1‑6 (MQ=255) ATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccacc < 2:1501065‑M1/91‑1 (MQ=255) ATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATaccacc < 2:222628‑M1/91‑1 (MQ=255) tCACAgcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttc < 1:3791089‑M1/91‑87 (MQ=255) tCACACACGGATTATCGTCGCtgtgattcgttttttttattatggcataaaaatgtgatatataaaattcgcttgttccgtggcttctttc < 2:1152395‑M2/91‑71 (MQ=255) tCACACACGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttc < 1:793095‑M2/91‑71 (MQ=255) cacacaCGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgacatataaaattcgcttgttccgtggcttttttca < 2:2893083‑M2/91‑72 (MQ=255) acacacGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttcaa < 1:1283544‑M2/91‑73 (MQ=255) ACACACGGATTATCGTCGCTGCGATTCGCTTTTATTTTTCTTTTTATTTCGCTTTACAACTAAGAATAGCATGATTGAAAATACCACcatc < 2:2614231‑M1/91‑1 (MQ=255) cagcgacgataatccgtgtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttcaaa > 2:945303‑M1/1‑2 (MQ=255) CACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatca < 2:2845109‑M1/91‑1 (MQ=255) agcgacgataatccgtgtgtgattcgtttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttcaaagc < 2:1088684‑M1/91‑91 (MQ=255) ACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatcat > 1:3279244‑M1/1‑91 (MQ=255) | ATTACTTAATCCTGAGGCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCAT > USA300TCH1516_ALE/2143293‑2143473 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |