| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2143383 | 129 (0.630) | 22 (0.130) | 11/132 | NT | 17.0% | intergenic (+18/+7) | USA300HOU_RS10935/USA300HOU_RS10940 | hypothetical protein/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2143399 | 109 (0.650) | coding (1245/1254 nt) | USA300HOU_RS10940 | hypothetical protein | |||||
Only 100 of 245 total aligned reads displayed.
GCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGC > USA300TCH1516_ALE/2143309‑2143488 | tatgatggtggtattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGc > 2:638764‑M1/62‑91 (MQ=255)gCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGc > 2:1640297/1‑91 (MQ=255)gCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAA‑CGAATCACACACGGATTATCGTCGCt < 2:1088684‑M2/91‑2 (MQ=255) cTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCt > 2:1200369‑M2/1‑90 (MQ=255) tttGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtg > 2:945303‑M2/1‑89 (MQ=255) tGAAAACAGCCACGGACCCAGCGCATTTTATATATCACATATTTACTCCCACCTAACAAAAACGAATCACACACGGACTATCATCGcgggg > 2:74526/1‑87 (MQ=255) gAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtga > 1:597766‑M2/1‑86 (MQ=255) gAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtga > 2:1296794‑M2/1‑86 (MQ=255) ttcaaagccACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgat < 2:388415‑M2/88‑7 (MQ=255) aaaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgat < 1:1457503‑M2/91‑7 (MQ=255) aaaaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTAACGTCGCtgtgat > 1:3036886‑M2/1‑85 (MQ=255) aaaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattc > 2:839216‑M2/1‑83 (MQ=255) aaaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcg < 1:3438266‑M2/91‑10 (MQ=255) aaGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgt < 2:1450414‑M2/91‑11 (MQ=255) tattttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGtt > 1:1516269‑M1/51‑91 (MQ=255) aGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgtt < 1:367134‑M2/91‑12 (MQ=255) gCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgttt < 2:1025741‑M2/91‑13 (MQ=255) gCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgttt < 1:503662‑M2/91‑13 (MQ=255) gCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCtgtgattcgttt < 1:3344975‑M2/91‑13 (MQ=255) ttttcaaacatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGtttt > 2:2552937‑M1/49‑91 (MQ=255) tttcaatcatgctattcttatttgtaaagcgaaataaaaagaaaaatAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGttttt > 1:3207207‑M1/48‑91 (MQ=255) cGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAt < 1:810854/91‑1 (MQ=255) tgAACAAGAAAATATTATATAGCACATTTTTATACATAAAAAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtt < 2:3909465/90‑1 (MQ=255) ggAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtt > 1:3736365/1‑91 (MQ=255) ggAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtt > 1:3395490/1‑91 (MQ=255) aaCAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAtttt < 1:2431097/91‑1 (MQ=255) aCAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTAttttt > 1:2947996/1‑91 (MQ=255) aaGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGGTTATCGTCGCTGTGATTCGTTTTTATTTTTCt > 1:1264523/1‑91 (MQ=255) aaGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCt > 2:3208583/1‑91 (MQ=255) aGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCtt < 2:3040812/91‑1 (MQ=255) gCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCttt > 1:3273274/1‑91 (MQ=255) gCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCttt > 2:2637048/1‑91 (MQ=255) gAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCttttt < 1:1110844/91‑1 (MQ=255) gAATTTTATATATCACATTTTTATTCCATAACAAAAAAAACCAATCACACACGGATTATCGTCGCTGCGATTCGTTTTTctttttcttttt > 2:3014317/1‑91 (MQ=255) aaTTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCtttttt > 2:2038558/1‑90 (MQ=255) ttttATATATCACATTTTTATTCCATAATAAAAAAAACGAATCAGACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAtt < 1:3153352/91‑1 (MQ=255) ttttATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTAtt < 2:2280903/91‑1 (MQ=255) ttATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTc > 1:1404797/1‑91 (MQ=255) atatatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGc > 1:1552949/1‑91 (MQ=255) atatatCACATTGTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGc < 2:419736/91‑1 (MQ=255) atatCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCtt > 1:1504633/1‑91 (MQ=255) tatCACATTTTTATTCCATAATAAAAAAACCGAATCACACACGCATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTTGCttt > 2:3446633/1‑91 (MQ=255) cacaTTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACa < 2:3412214/91‑1 (MQ=255) aTTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAAt > 1:75023/1‑91 (MQ=255) tttttATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATa > 1:3285619/1‑91 (MQ=255) ttttATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATaa < 2:2228946/91‑1 (MQ=255) ttATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGa > 1:2584216/1‑91 (MQ=255) tATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGaa > 2:3826431/1‑91 (MQ=255) aTTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAAt > 2:2370736/1‑91 (MQ=255) ttCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGTTTTACAAATAAGCATa > 2:1505452/1‑91 (MQ=255) ttCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATa > 1:1621018/1‑91 (MQ=255) tCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAg < 1:1087800/91‑1 (MQ=255) tCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAg < 2:1344955/91‑1 (MQ=255) ccATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGc < 2:1498566/91‑1 (MQ=255) ataataAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCAt > 1:3834994/1‑91 (MQ=255) ataataAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCAt > 1:2149588/1‑91 (MQ=255) ataaAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGAt < 1:1681863/91‑1 (MQ=255) ataaAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGAt < 1:2680707/91‑1 (MQ=255) ataaAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGAt < 1:3900716/91‑1 (MQ=255) aaaaaaaaCGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTg > 1:1026575/1‑91 (MQ=255) AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa > 2:2095518‑M1/1‑91 (MQ=255) AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa < 1:217838‑M1/91‑1 (MQ=255) AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa < 2:828034‑M1/91‑1 (MQ=255) AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa > 1:1348247‑M1/1‑91 (MQ=255) AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa < 1:2463703‑M1/91‑1 (MQ=255) AAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGaaa > 1:123559‑M1/1‑91 (MQ=255) aaaaCGAATCACACACGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtgg < 2:2003346‑M2/91‑63 (MQ=255) AAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAAt > 1:3313415‑M1/1‑91 (MQ=255) AAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAAt < 2:3346271‑M1/91‑1 (MQ=255) AACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATa > 2:3500053‑M1/1‑91 (MQ=255) AACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATa > 2:550979‑M1/1‑91 (MQ=255) ACGAATCACACACGGATTATCGGCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATac < 1:177916‑M1/91‑1 (MQ=255) CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGGAAATacc < 1:1974110‑M1/91‑1 (MQ=255) CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacc < 2:1924284‑M1/91‑1 (MQ=255) CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacc < 1:3490536‑M1/91‑1 (MQ=255) CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacc < 2:3282471‑M1/91‑1 (MQ=255) CGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacc < 1:2906914‑M1/91‑1 (MQ=255) GAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTGTCTTTTTATTTCGCTTTACAAATAAGGATAGCATGATTGAAAATacca > 1:335884‑M1/1‑91 (MQ=255) GAATCACACACGGATTATCGTCGCTGTGAGTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATacca > 1:3167136‑M1/1‑91 (MQ=255) aaTCACACACGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttt < 1:1765421‑M2/91‑69 (MQ=255) aTCACACACGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggctttttt < 2:386411‑M2/91‑70 (MQ=255) tCACACACGGATTATCGTCGCtgtgattcgttttttttattatggcataaaaatgtgatatataaaattcgcttgttccgtggcttctttc < 2:1152395‑M2/91‑71 (MQ=255) tCACACACGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttc < 1:793095‑M2/91‑71 (MQ=255) cacacaCGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttca < 2:2893411‑M2/91‑72 (MQ=255) acacacGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtggtatataaaattcgcttgttccgtggcttttttcaa < 1:1721706‑M2/91‑73 (MQ=255) ACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatc > 1:2187735‑M1/1‑91 (MQ=255) ACACACGGATTATCGTCGCTGCGATTCGCTTTTATTTTTCTTTTTATTTCGCTTTACAACTAAGAATAGCATGATTGAAAATACCACcatc < 2:2614231‑M1/91‑1 (MQ=255) CACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatca < 1:2273667‑M1/91‑1 (MQ=255) CACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatca < 2:2845109‑M1/91‑1 (MQ=255) acacGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttcaaag < 2:1722304‑M2/91‑75 (MQ=255) ACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACcatcat > 2:282984‑M1/1‑91 (MQ=255) cacGGATTATCGTCGCtgtgattcgttttttttattatggaataaaaatgtgatatataaaattcgcttgttccgtggcttttttcaaagc < 2:1219029‑M2/91‑76 (MQ=255) acGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAg < 1:673837/91‑1 (MQ=255) ggATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGaa > 1:2070554/1‑91 (MQ=255) ggATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGaa < 1:1865780/91‑1 (MQ=255) tATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATa < 1:235159/91‑1 (MQ=255) aTCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATAc > 1:3092823/1‑91 (MQ=255) aTCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATAc < 1:286399/91‑1 (MQ=255) aTCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATAc < 2:1990236/91‑1 (MQ=255) cgtcgCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACaa > 1:1826741/1‑91 (MQ=255) | GCTTTGAAAAAAGCCACGGAACAAGCGAATTTTATATATCACATTTTTATTCCATAATAAAAAAAACGAATCACACACGGATTATCGTCGCTGTGATTCGTTTTTATTTTTCTTTTTATTTCGCTTTACAAATAAGAATAGCATGATTGAAAATACCACCATCATAGAACATACAATTGC > USA300TCH1516_ALE/2143309‑2143488 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |