| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2201286 | 162 (0.800) | 12 (0.070) | 10/136 | NT | 8.1% | intergenic (+16/+353) | kdpE/cshA | KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA |
| ? | USA300TCH1516_ALE | = 2201313 | 135 (0.780) | intergenic (+43/+326) | kdpE/cshA | KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA | |||||
Only 100 of 330 total aligned reads displayed.
CATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTT > USA300TCH1516_ALE/2201196‑2201376 | gaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATc < 1:1134303‑M1/12‑1 (MQ=255)gaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATc < 1:506214‑M1/12‑1 (MQ=255)gaaatttcagtatcatgttcttataaaaaacaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATc < 2:3599277‑M1/12‑1 (MQ=255)cATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATC > 2:2449417‑M1/1‑91 (MQ=255) aTGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCg > 1:1248379/1‑91 (MQ=255) tGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGc > 2:1244839/1‑91 (MQ=255) gAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCt < 2:1230211/91‑1 (MQ=255) aGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTg > 2:1770592/1‑91 (MQ=255) aGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTg < 2:1144983/91‑1 (MQ=255) aGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTg < 1:2179933/91‑1 (MQ=255) aGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTg < 1:786010/91‑1 (MQ=255) gACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGcc > 2:1209910/1‑91 (MQ=255) cGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCAt < 1:1179305/91‑1 (MQ=255) cGCAAAAGATAGTATTAAAACAGATCCACGCATTGGTTATCAAATGTTGTAGTGGAAAGCGAAATAATTAAATAAAAAAGATCGCTGCCAt < 2:3008761/91‑1 (MQ=255) gCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCAtt > 1:298209/1‑91 (MQ=255) aaaGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTaaa > 1:2414323/1‑91 (MQ=255) aaaGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTaaa < 2:1179890/91‑1 (MQ=255) aGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACg < 2:1398039/91‑1 (MQ=255) gATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGa > 2:2839543/1‑91 (MQ=255) attattAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATg > 1:556710/1‑91 (MQ=255) attattAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATg > 1:2307308/1‑91 (MQ=255) attaAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGAtt < 1:1841383/91‑1 (MQ=255) attaAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGAtt < 1:2630291/91‑1 (MQ=255) aaaaCACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGc > 2:398832/1‑91 (MQ=255) aaaaCACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAAATAAATAAAAAAGATCactgccaatcattcgtttaatggc < 2:653294‑M1/91‑25 (MQ=255) agcacatcCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCactgccaatcattcgtttaatggcag < 2:2532943‑M1/89‑27 (MQ=255) acacATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCactgccaatcattcgtttaatggcagc < 2:919932‑M1/91‑28 (MQ=255) acacATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGt < 1:2874023/91‑1 (MQ=255) acacATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGt < 2:1966111/91‑1 (MQ=255) cacaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTg > 2:713805‑M2/1‑90 (MQ=255) cacaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTg < 2:3790335‑M2/91‑2 (MQ=255) acaatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGa > 2:2349060‑M1/51‑91 (MQ=255) acaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTga < 2:3335087‑M2/91‑3 (MQ=255) acaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTga > 1:2556424‑M2/1‑89 (MQ=255) caatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGAt > 1:2079806‑M1/50‑91 (MQ=255) caagagggcttgttgctgacgctagtgggcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGAt > 2:183027‑M1/50‑91 (MQ=255) caTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGTGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgat < 1:3351798‑M2/91‑4 (MQ=255) caTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCactgccaatcattcgtttaatggcagcgat < 2:3417438‑M1/91‑31 (MQ=255) caTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgat > 2:792428‑M2/1‑88 (MQ=255) aTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatc < 2:3614423‑M2/91‑5 (MQ=255) aTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatc > 2:2891093‑M2/1‑87 (MQ=255) aTCCACGCATTGGTTATCAAATGTTGCAGGGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGACAGTgatc > 2:2450747‑M2/1‑87 (MQ=255) tagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCtt > 2:3353330‑M1/47‑91 (MQ=255) cACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttt < 2:2328162‑M2/91‑8 (MQ=255) ggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCttttt > 2:3146622‑M1/44‑91 (MQ=255) cGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttt < 2:515664‑M2/91‑10 (MQ=255) aTTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttttat < 1:338762‑M2/91‑13 (MQ=255) aTTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttttat < 2:3708043‑M2/91‑13 (MQ=255) tGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTatat > 1:2527287/1‑91 (MQ=255) tGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAATGATCTTTTTTatat < 2:1392839/91‑1 (MQ=255) ggTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttttattta < 1:136240‑M2/91‑16 (MQ=255) ggTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttttattta < 1:135293‑M2/91‑16 (MQ=255) ggTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATAtt > 1:1073213/1‑91 (MQ=255) gTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTc < 1:1329473/91‑1 (MQ=255) ttATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCa > 2:1908908/1‑91 (MQ=255) ttATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCa < 1:1641943/91‑1 (MQ=255) cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAGAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt < 2:1101521/91‑1 (MQ=255) cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt > 1:2797635/1‑91 (MQ=255) cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt > 2:3079159/1‑91 (MQ=255) cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt > 2:2291123/1‑91 (MQ=255) cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt < 1:3593378/91‑1 (MQ=255) aaaTGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtta < 2:3866290/91‑1 (MQ=255) aaTGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttat < 2:3194092/91‑1 (MQ=255) aaTGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttat < 1:336089/91‑1 (MQ=255) aTGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatt < 1:3857267/91‑1 (MQ=255) aTGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatt < 1:2660358/91‑1 (MQ=255) tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta > 2:2016587/1‑91 (MQ=255) tGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatta > 2:2482533/1‑91 (MQ=255) gTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTtattat < 2:2671908/91‑1 (MQ=255) tGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTAttattt > 1:377152/1‑91 (MQ=255) gTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGTAGTGATCTTTTTTATATTCAACTTATTATTTATcg > 1:346636/1‑91 (MQ=255) ggAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATcgcg > 1:2753643/1‑91 (MQ=255) aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa > 1:1046186/1‑91 (MQ=255) aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa > 1:3221676/1‑91 (MQ=255) aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCCTTTTTATATTCCACTTATTATTTATCGCGCa > 2:1658682/1‑91 (MQ=255) aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGAGATCTTTTTTATATTCAACTTATTATTTATCGCGCa > 2:3483197/1‑91 (MQ=255) aaaGAGAAATAAGTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa < 2:3292974/91‑1 (MQ=255) aaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCAc > 2:3219606/1‑91 (MQ=255) agagAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACt < 1:2145279/91‑1 (MQ=255) aataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGt > 1:1420107/1‑91 (MQ=255) ataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTc > 1:860251/1‑91 (MQ=255) taatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCa < 1:3124500/91‑1 (MQ=255) aatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAg > 2:1513317/1‑91 (MQ=255) ttAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCa < 1:3657159/91‑1 (MQ=255) ttAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCa < 1:1607324/91‑1 (MQ=255) ttAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCa > 1:1442009/1‑91 (MQ=255) gaagataaaaaagATCactgccaatcattcgtttaatggcagcgatcttttttatttaattatttctctttccactgcaacatttgataac < 2:105199‑M1/87‑76 (MQ=255) taaataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaa > 2:1296148/1‑91 (MQ=255) TAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAg < 1:2269267‑M1/91‑1 (MQ=255) aaaaaaGATCactgccaatcattcgtttaatggcagcgatcttttttatttaattatttctctttccactgcaacatttgataaccaatgc < 1:427926‑M1/91‑82 (MQ=255) AAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGccc < 2:546601‑M1/91‑1 (MQ=255) aaaGATCactgccaatcattcgtttaatggcagcgatcttttttatttaattatttctctttccactgcaacatttgataaccaatgcgtg < 1:3318237‑M1/91‑85 (MQ=255) AAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCt > 1:1551436‑M1/1‑91 (MQ=255) GATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTAtt < 1:2962113‑M1/91‑1 (MQ=255) aTCactgccaatcattcgtttaatggcagcgatctcttttatttaattatttctctttccactgcaacatttgataaccaatgcgcggatg > 2:3205427‑M1/1‑3 (MQ=255) ATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTCATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTg < 2:1531006‑M1/91‑1 (MQ=255) TCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGt > 2:2140769‑M1/1‑91 (MQ=255) cactgccaatcattcgtttaatggcagcgatcttttttatttaattatttctctttccactgcaacatttgataaccaatgcgtggatgtg > 2:2029849‑M1/1‑1 (MQ=255) cactgccaatcattcgtttaatggcagcgatcttttttatttaattatttctctttccactgcaacatttgataaccaatgcgtggatgtg > 1:3537044‑M1/1‑1 (MQ=255) CGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtt < 1:801423‑M1/91‑1 (MQ=255) | CATGAGGACGCAAAAGATATTATTAAAACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTT > USA300TCH1516_ALE/2201196‑2201376 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |