| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2201286 | 162 (0.800) | 12 (0.070) | 10/136 | NT | 8.1% | intergenic (+16/+353) | kdpE/cshA | KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA |
| ? | USA300TCH1516_ALE | = 2201313 | 135 (0.780) | intergenic (+43/+326) | kdpE/cshA | KDP operon transcriptional regulatory protein KdpE/DEAD‑box ATP‑dependent RNA helicase CshA | |||||
Only 100 of 269 total aligned reads displayed.
ACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTT > USA300TCH1516_ALE/2201223‑2201403 | acacATCCCCGCATTGGTTATAAAATGTGACAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGt < 2:2410245/91‑1 (MQ=255)acacATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGt < 1:3538445/91‑1 (MQ=255)acacATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGt < 1:2874023/91‑1 (MQ=255) cacaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTg > 2:2029849‑M2/1‑90 (MQ=255) cacaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTg > 2:713805‑M2/1‑90 (MQ=255) cacaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTg > 2:181783‑M2/1‑90 (MQ=255) acaTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTATATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTga < 2:3468925‑M2/91‑3 (MQ=255) aatagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATc > 1:2372644‑M1/49‑91 (MQ=255) aTCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatc > 2:2891093‑M2/1‑87 (MQ=255) aTCCACGCATTGGTTATCAAATGTTGCAGGGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGACAGTgatc > 2:2450747‑M2/1‑87 (MQ=255) tagggctttttgctgacgctagtgcgcgataaataataagttgaatATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCtt > 2:3353330‑M1/47‑91 (MQ=255) cGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttt < 2:515664‑M2/91‑10 (MQ=255) gCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatctttttt < 1:427926‑M2/91‑11 (MQ=255) aTTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttttat < 1:338762‑M2/91‑13 (MQ=255) tGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTatat > 1:2527287/1‑91 (MQ=255) ggTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttttattta < 1:136240‑M2/91‑16 (MQ=255) ggTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttttattta < 1:135293‑M2/91‑16 (MQ=255) ggTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATAtt > 2:1185033/1‑91 (MQ=255) gTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTc > 2:3663554/1‑91 (MQ=255) ttATCAAATGTTGCAGTGTAAAGAGAAATAATTAAATAAATAAGATCGTTGCCAATAAACGAATGATTGGCAGTGATCTTTTTTATATTCa < 2:406524/91‑1 (MQ=255) ttATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCa > 2:1909559/1‑91 (MQ=255) ttATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCa < 1:1641943/91‑1 (MQ=255) aTCAAAGGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAAc < 1:1173131/91‑1 (MQ=255) cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt < 1:3593540/91‑1 (MQ=255) cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt > 2:1214576/1‑91 (MQ=255) cAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtt > 1:2797635/1‑91 (MQ=255) aaaTGTTGCCGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACtta < 2:3866217/91‑1 (MQ=255) aaTGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttat < 1:336089/91‑1 (MQ=255) aTGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatt > 1:1586949/1‑91 (MQ=255) aTGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACttatt < 2:1711388/91‑1 (MQ=255) tGTTGCAGTGGACAGAGAAATAATTAAATAAAAAAGCTCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAGCctatta > 2:3198293/1‑91 (MQ=255) gTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTtattat < 2:2671908/91‑1 (MQ=255) gTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTtattat < 2:1146866/91‑1 (MQ=255) gTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTtattat < 2:2489253/91‑1 (MQ=255) ttGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTattatt < 1:3939465/91‑1 (MQ=255) gCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTAttattta > 1:1317686/1‑91 (MQ=255) aGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATc > 1:2013330/1‑91 (MQ=255) gTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGTAGTGATCTTTTTTATATTCAACTTATTATTTATcg > 1:346636/1‑91 (MQ=255) ggAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATcgcg > 1:2753643/1‑91 (MQ=255) gAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCgcgc > 2:2976352/1‑91 (MQ=255) aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa < 1:555087/91‑1 (MQ=255) aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa > 1:1046186/1‑91 (MQ=255) aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa > 2:1227077/1‑91 (MQ=255) aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa > 2:1659752/1‑91 (MQ=255) aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa > 1:1046509/1‑91 (MQ=255) aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa < 1:1491661/91‑1 (MQ=255) aaaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa > 1:3221676/1‑91 (MQ=255) aaaGAGAAATAAGTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCa < 2:3292974/91‑1 (MQ=255) aaGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCgcgccc > 2:1159932/1‑89 (MQ=255) agagAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACt < 1:644806/91‑1 (MQ=255) agaAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAg > 2:81745/1‑91 (MQ=255) ataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTc > 1:860251/1‑91 (MQ=255) ataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTc > 2:224813/1‑91 (MQ=255) ataatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTc > 2:3605307/1‑91 (MQ=255) taatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCa < 1:3852628/91‑1 (MQ=255) taatTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCa < 1:1296042/91‑1 (MQ=255) ttAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCa < 1:3657159/91‑1 (MQ=255) aataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTgatcttttttatttaattatttctctttacactgcaacatttgataaccaa < 2:3191173‑M2/91‑52 (MQ=255) aataaaAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaaa > 1:1120828/1‑91 (MQ=255) ATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaaaa > 2:3218612‑M1/1‑91 (MQ=255) ATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaaaa > 2:3028427‑M1/1‑91 (MQ=255) ATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCaaaaa < 1:2115241‑M1/91‑1 (MQ=255) AAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGAAAAAAGc > 2:3328848‑M1/1‑91 (MQ=255) AAAAAGATCGCTGCCATCAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTCTTATTTATCGCGCACTAGCGTCAGCAAAAAGcc < 2:1281038‑M1/91‑1 (MQ=255) AAAAAGAACGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGcc > 2:3498974‑M1/1‑91 (MQ=255) AAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGccc > 1:2207284‑M1/1‑91 (MQ=255) AAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGccc > 2:3754552‑M1/1‑91 (MQ=255) AAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGAAAAAAGCCCTa > 2:3097040‑M1/1‑91 (MQ=255) AGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTAt < 1:1948189‑M1/91‑1 (MQ=255) GATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTAtt > 2:1310905‑M1/1‑91 (MQ=255) GATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTAtt < 1:2962150‑M1/91‑1 (MQ=255) aTCGCTGCCATTAAACGAATGATTGGCAGTgatcttttttatttaattatttctctttccactgcaacatttgataaccaatgcgtggatg < 2:2349025‑M2/91‑62 (MQ=255) ATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCACCTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTg < 2:201039‑M1/91‑1 (MQ=255) ATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTCATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTg < 2:1531006‑M1/91‑1 (MQ=255) tCGCTGCCATTAAACGAATGATTGGCAGTgatcgtttatatttaatcatttctctttccactgcaacatttgataaccaatgcgtggatgt < 1:3158366‑M2/91‑63 (MQ=255) gCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGt > 1:890244‑M1/2‑91 (MQ=255) TCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGt > 2:2140769‑M1/1‑91 (MQ=255) CGCTGCCATTAACCGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATCGtt < 1:3056919‑M1/91‑1 (MQ=255) CGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtt > 1:1426261‑M1/1‑91 (MQ=255) CGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtt < 1:801423‑M1/91‑1 (MQ=255) CGCTGCCAGTAAACGAATGATGGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtt > 2:589816‑M1/1‑91 (MQ=255) gCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGttt > 1:1420583/1‑91 (MQ=255) gCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGttt > 2:1958118/1‑91 (MQ=255) cTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGtttt > 1:3346046/1‑91 (MQ=255) tGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGttttt > 1:2453708/1‑91 (MQ=255) tGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGttttt > 1:2579628/1‑91 (MQ=255) gCCATTAAACGAATGATTGGCAGTgatcttttttatttatttatttctctttccactgcaacatttgataaccaatgcgtggatgtgtttt < 2:653294‑M2/91‑68 (MQ=255) ccATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTta > 1:498496/1‑91 (MQ=255) cATTAAACGAATGATTGGCAGTgatcttttttatttaattatttctctttccactgcaacatttgataaccaatgcgtggatgtgttttca < 2:1437041‑M2/91‑70 (MQ=255) aTTAAACGAATGATTGGCAGTgatcttttttatttaattatttctctttccactgcaacatttgataaccaatgcgtggatgtgttttaat < 2:105784‑M2/91‑71 (MQ=255) aTTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTtata > 1:1736784/1‑91 (MQ=255) ttAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATaa > 1:2677893/1‑91 (MQ=255) ttAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATaa < 1:262266/91‑1 (MQ=255) tAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAg > 1:1856464/1‑91 (MQ=255) aaaCGAATGATTGGCAGTgatcttttttatataattctctctctttccactgcaacatttgataaccaatgcgtggatgtgttttaataat < 2:1412046‑M2/91‑74 (MQ=255) aTTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTGGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACGTGATAc < 2:971313/91‑1 (MQ=255) aTTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGAACTAGCAAAAAAAAAAAGCCCTATTGTTTTTTATAAGAACATGATAc < 2:2559330/91‑1 (MQ=255) ggCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGa < 1:3765578/91‑1 (MQ=255) cAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGaaa < 1:2928353/91‑1 (MQ=255) tGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATTAGTACATGATACTGAAAtct > 2:3857118/1‑89 (MQ=255) | ACACATCCACGCATTGGTTATCAAATGTTGCAGTGGAAAGAGAAATAATTAAATAAAAAAGATCGCTGCCATTAAACGAATGATTGGCAGTGATCTTTTTTATATTCAACTTATTATTTATCGCGCACTAGCGTCAGCAAAAAGCCCTATTGTTTTTTATAAGAACATGATACTGAAATTT > USA300TCH1516_ALE/2201223‑2201403 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |