| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2388299 | 138 (0.680) | 20 (0.130) | 11/126 | NT | 14.9% | intergenic (+34/+68) | ribZ_1/sarV | Riboflavin transporter RibZ/HTH‑type transcriptional regulator SarV |
| ? | USA300TCH1516_ALE | = 2388344 | 121 (0.760) | intergenic (+79/+23) | ribZ_1/sarV | Riboflavin transporter RibZ/HTH‑type transcriptional regulator SarV | |||||
Only 100 of 328 total aligned reads displayed.
ATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTT > USA300TCH1516_ALE/2388209‑2388389 | aTGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATC > 2:1521173‑M1/1‑91 (MQ=255) gCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAAtctc < 2:3124776/91‑1 (MQ=255) ttGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTa > 1:3781249/1‑91 (MQ=255) tttACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATtc < 2:200743/91‑1 (MQ=255) tttACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTAAAAAATAAAAAGCATGCCAATCTCTATtc < 2:200187/91‑1 (MQ=255) tACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATtcat < 1:2387735/91‑1 (MQ=255) aCTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGACCTCAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATttatc > 2:894045/1‑91 (MQ=255) aCTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATtcatc > 2:608238/1‑91 (MQ=255) cttcttAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATtcatca < 2:182273/91‑1 (MQ=255) tcttAATTCATGGACGACATTTAACTAGAAATGCGATGACCTAAATATTTATATTTAAAAATAAAAAGCATGCCAATCTCTATTCATCAtt > 2:2436763/1‑91 (MQ=255) tcttAATTCAT‑GACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCAttt > 2:3652140/1‑91 (MQ=255) ttAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTtg < 2:1155445/91‑1 (MQ=255) aaTTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgtc < 2:656800/91‑1 (MQ=255) ttCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgtctg < 1:1510948/91‑1 (MQ=255) tCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgtctgt > 2:2540761/1‑91 (MQ=255) tCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgtctgt > 2:2473018/1‑91 (MQ=255) cATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgtctgtc > 1:1363277/1‑91 (MQ=255) cATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTtgtctgtc > 1:2158152/1‑91 (MQ=255) aTGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTcc > 2:2023233/1‑91 (MQ=255) ggACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTATATTCATCATTTGTCTGTcccc > 2:3591912/1‑91 (MQ=255) gACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCa < 1:3573938/91‑1 (MQ=255) cGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAg < 2:2412051/91‑1 (MQ=255) cGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAg < 1:121374/91‑1 (MQ=255) tCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATCAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGAc > 1:3133184/1‑91 (MQ=255) tCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGAc > 2:1259322/1‑91 (MQ=255) tCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGAc < 1:416667/91‑1 (MQ=255) aTGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGc < 1:533798/91‑1 (MQ=255) aTGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTAGACATCATTTGACTGTCCCCAAGACGc > 2:3420564/1‑91 (MQ=255) tGTAACTAGAAATGCCATGAACTAAATGCTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCa > 2:3959806/1‑91 (MQ=255) tGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCa > 1:1914385/1‑91 (MQ=255) tGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCa < 1:1899998/91‑1 (MQ=255) gTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATCCATCATTTGTCTGTCCCCAAGACGCaa > 2:900717/1‑91 (MQ=255) aaCTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAAtt < 2:2305555/91‑1 (MQ=255) aaCTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAAtt < 2:1394970/91‑1 (MQ=255) tAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTatg < 1:1811988/91‑1 (MQ=255) tAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTatg < 1:1776083/91‑1 (MQ=255) aGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTatga > 2:2562631/1‑91 (MQ=255) gAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTatgat > 2:2879975/1‑91 (MQ=255) aaaTGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTatgatg < 1:3736073/91‑1 (MQ=255) aaaTGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTatgatg < 1:734683/91‑1 (MQ=255) aaTGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGt > 1:980832/1‑91 (MQ=255) aTGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTa > 2:1238407/1‑91 (MQ=255) tGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTAc < 2:637139/91‑1 (MQ=255) gaagtgttaagcgttacaaactaaaaactTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACt > 2:2942712‑M1/30‑91 (MQ=255) gCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACt < 1:2360154/91‑1 (MQ=255) ccATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTg > 1:1954103‑M2/1‑90 (MQ=255) ccATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTg < 1:2338677‑M2/91‑2 (MQ=255) aagtgttaagcgttacaaactaaaaactTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTg > 1:628504‑M1/29‑91 (MQ=255) aagtgttaagcgttacaaactaaaaactTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTg > 2:820957‑M1/29‑91 (MQ=255) aagtgttaagcgttacaaactaaaaactTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTg > 1:2227179‑M1/29‑91 (MQ=255) cATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagaga < 1:2414652‑M1/91‑48 (MQ=255) cATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCACTTGTCTGTCCCCAAGACGCAATTATGATGTACTga < 1:1898097‑M2/91‑3 (MQ=255) aTGAACTAAATATTTATATTCAAAAGTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgat > 2:3812856‑M2/1‑88 (MQ=255) aTGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgat > 1:542816‑M2/1‑88 (MQ=255) tgttaagcgttacaaactaaaaactTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGAtt > 2:2754206‑M1/26‑91 (MQ=255) tGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagatt < 1:1732360‑M1/91‑50 (MQ=255) gttaagcgttacaaactaaaaactTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTg > 1:3704352‑M1/25‑91 (MQ=255) gAACTAGATGTTTATAGTCAAAAATAAAAAGGAGGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattg < 2:2663357‑M1/91‑51 (MQ=255) gAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattg < 1:1006693‑M1/91‑51 (MQ=255) gAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattg > 1:2068965‑M2/1‑86 (MQ=255) aaCTAAATATTTATATTCAAAAATAAAAAGCAAGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattgg < 1:3357425‑M1/91‑52 (MQ=255) aCTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggc < 1:1535212‑M2/91‑8 (MQ=255) cTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggca < 1:2306339‑M1/91‑54 (MQ=255) tAAATATTTATATTCAAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcat < 1:3763630‑M1/91‑55 (MQ=255) tAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcat > 1:1595537‑M2/1‑82 (MQ=255) gcgttacaaactaaaaactTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATg > 2:2879059‑M1/20‑91 (MQ=255) aaaTATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatg < 1:1633617‑M2/91‑11 (MQ=255) aaaTATCTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatg < 2:2151128‑M2/91‑11 (MQ=255) aaTATTTATATTCAAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgc < 2:1772262‑M1/91‑57 (MQ=255) atTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttt > 1:2807103‑M2/1‑77 (MQ=255) atTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttt > 1:1035927‑M2/1‑77 (MQ=255) tataTTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttttta < 1:1996992‑M2/91‑18 (MQ=255) tataTTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgcttttta < 2:1586701‑M2/91‑18 (MQ=255) atatTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTaa < 2:2814092/91‑1 (MQ=255) tCAAAAATAAAAAGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttattttt < 1:605216‑M1/91‑68 (MQ=255) aaTAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGt < 2:465777/91‑1 (MQ=255) TAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGttt < 1:2718478‑M1/91‑1 (MQ=255) aaaaaGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatataa > 1:2922951‑M1/1‑16 (MQ=255) aaaaaGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatataa > 2:3632478‑M1/1‑16 (MQ=255) aaaaaGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagatcggcatgctttttatttttgaatataa > 2:528827‑M1/1‑16 (MQ=255) AAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTg < 1:3089872‑M1/91‑1 (MQ=255) AAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGt < 1:86322‑M1/91‑1 (MQ=255) aaaGCATGCCAATCagtacatcataattgcgtcctggggacagacaaatgatgaatagagattggcatgctttttacttttgaatataaat > 1:1035869‑M1/1‑14 (MQ=255) aaaGCATGCCAAGCagtacagcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatataaat < 2:3804312‑M1/91‑78 (MQ=255) aaGCATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatataaata > 1:1502598‑M1/1‑13 (MQ=255) aaGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgatttgcatgctttttatttttgaatataaata < 2:1191069‑M2/91‑34 (MQ=255) AAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTaa < 2:1974873‑M1/91‑1 (MQ=255) AAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTaa < 2:1734797‑M1/91‑1 (MQ=255) AGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAAc < 2:2087991‑M1/91‑1 (MQ=255) AGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAAc < 1:1079173‑M1/91‑1 (MQ=255) AGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAAc > 1:2545170‑M1/1‑91 (MQ=255) gCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatt < 2:3196401‑M2/91‑36 (MQ=255) GCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATATACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACg < 1:2590881‑M1/91‑1 (MQ=255) cATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatataaatattt < 2:3367051‑M1/91‑82 (MQ=255) cATGCCAATCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatataaatattt < 2:700317‑M1/91‑82 (MQ=255) ccAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatttagtt < 1:1752027‑M2/91‑41 (MQ=255) cAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatttagttc < 2:2663046‑M2/91‑42 (MQ=255) aTCagtacatcataattgcgtcttggggacagacaaatgatgaatagagattggcatgctttttatttttgaatataaatatttagttcat > 2:333633‑M1/1‑3 (MQ=255) ctctATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTgattggcatgctttttatttttgaatataaatatttagttcatgg < 2:1547359‑M2/91‑46 (MQ=255) cagtatatcataattgcgtcttggggacagacaaatgatgaatagagattggcttgctttttatttttgaatataaatatttagttcatgg < 1:3670911‑M1/91‑91 (MQ=255) | ATGCTTGTTTACTTCTTAATTCATGGACGTCATGTAACTAGAAATGCCATGAACTAAATATTTATATTCAAAAATAAAAAGCATGCCAATCTCTATTCATCATTTGTCTGTCCCCAAGACGCAATTATGATGTACTGATTGGCATGCTTTTTAAGTTTTTAGTTTGTAACGCTTAACACTT > USA300TCH1516_ALE/2388209‑2388389 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |