BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2681949 =	134 (0.660)	10 (0.050)	7/150	NT	7.0%	coding (873/1278 nt)	mvaA	3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase
*	?	USA300TCH1516_ALE	2681984 =	142 (0.740)	10 (0.050)	7/150	NT	7.0%	coding (838/1278 nt)	mvaA	3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase

Only 100 of 165 total aligned reads displayed.

GTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATT  >  USA300TCH1516_ALE/2681860‑2682038

ggcccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgatacg                                                                                           <  1:3714511‑M1/2‑1 (MQ=255)

 tCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTcgc                                                                                          <  1:1344626/91‑1 (MQ=255)

 tCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTcgc                                                                                          <  1:672314/91‑1 (MQ=255)

 tCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTcgc                                                                                          >  2:1909495/1‑91 (MQ=255)

 gcccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgatacgc                                                                                          <  1:3934323‑M1/3‑1 (MQ=255)

  cccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgatacgcg                                                                                         >  1:2523600‑M1/88‑91 (MQ=255)

   ccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgataCGCGt                                                                                        >  2:2952186‑M1/87‑91 (MQ=255)

   ccaagtagatattcatcgtgcagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgataCGCGt                                                                                        <  1:1855384‑M1/5‑1 (MQ=255)

   aTAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGt                                                                                        <  1:259206/91‑1 (MQ=255)

     aGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTa‑t                                                                                     >  2:698610/1‑91 (MQ=255)

     aGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTa‑t                                                                                     <  1:3476032/91‑1 (MQ=255)

         aCTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTa‑tgcat                                                                                 <  1:1950509/91‑1 (MQ=255)

          cTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTa‑tgcatg                                                                                >  2:2680808/1‑91 (MQ=255)

          cTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTa‑tgcatg                                                                                >  2:870022/1‑91 (MQ=255)

          cTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTa‑tgcatg                                                                                >  1:2160957/1‑91 (MQ=255)

            tCAATTGTACCAATCAATCGTTCACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATgcg                                                                              <  2:3180724/91‑1 (MQ=255)

             cAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATgcgc                                                                             <  2:1636177/91‑1 (MQ=255)

             cAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATgcgc                                                                             <  1:266108/91‑1 (MQ=255)

               aTTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCAc                                                                           >  1:1288046/1‑91 (MQ=255)

               aTTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCAc                                                                           <  1:1485229/91‑1 (MQ=255)

                    aCCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCt                                                                      >  2:1449621/1‑91 (MQ=255)

                    aCCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACAACGATACTGTCCGTCCCGACTCGCGTC‑TGCATGCGCACTTGCt                                                                      >  2:1572400/1‑91 (MQ=255)

                       cagcaacacataataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgataCGCGTA‑TGCATGCGCACTTGCTTCt                                                                   >  2:708288‑M1/67‑91 (MQ=255)

                         tcaatcGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGc                                                                 <  2:3127854/91‑1 (MQ=255)

                         tcaatcGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGc                                                                 <  1:2903636/91‑1 (MQ=255)

                         tcaatcGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGc                                                                 <  2:3127778/91‑1 (MQ=255)

                         gcagcacatcataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgataCGCGTA‑TGCATGCGCACTTGCTTCTGc                                                                 >  1:3552413‑M1/65‑91 (MQ=255)

                           aacgcataatgaaggggttatgaatggcatacatgctgttgttttagcaacaggaaatgataCGCGTGGTGCATGCGCACTTGCTTCTGca                                                                >  2:3798008‑M1/63‑91 (MQ=255)

                            atcGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGcacc                                                              >  1:3825165/1‑91 (MQ=255)

                               gTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCAcg                                                           >  1:2788873/1‑91 (MQ=255)

                               gTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCAcg                                                           <  1:2800198/91‑1 (MQ=255)

                               gTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCAcg                                                           >  1:2089573/1‑91 (MQ=255)

                                 taataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgataCGCGTA‑TGCATGCGCACTTGCTTCTGCACCAcgcg                                                         >  1:2324730‑M1/57‑91 (MQ=255)

                                 taataaaggtgttatgaatggcatacatgctgttgttttagcaacaggaaatgataCGCGTA‑TGCATGCGCACTTGCTTCTGCACCAcgcg                                                         >  1:3606839‑M1/57‑91 (MQ=255)

                                 tGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCAcgcg                                                         <  2:1755989/91‑1 (MQ=255)

                                 tGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCAcgcg                                                         >  2:1317664/1‑91 (MQ=255)

                                  gACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGt                                                        <  1:3594224/91‑1 (MQ=255)

                                   aCGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTa                                                       <  1:2212288/91‑1 (MQ=255)

                                     gATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATc                                                     <  2:251752/91‑1 (MQ=255)

                                     gATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATc                                                     <  1:1759696/91‑1 (MQ=255)

                                     gATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATc                                                     <  1:3186240/91‑1 (MQ=255)

                                     aaaggtgttatgaatggcgtacatgctgttgttttagcaacaggaaatgactCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATc                                                     >  2:3714966‑M1/53‑91 (MQ=255)

                                       tCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCAt                                                   <  1:3409643/91‑1 (MQ=255)

                                       tCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCAt                                                   <  2:2772588/91‑1 (MQ=255)

                                        cTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCAtt                                                  >  1:3408230/1‑91 (MQ=255)

                                        cTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCAtt                                                  <  2:3704382/91‑1 (MQ=255)

                                        cTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCAtt                                                  <  2:2175889/91‑1 (MQ=255)

                                           gATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTcc                                               <  1:2883203/91‑1 (MQ=255)

                                            aTCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCt                                              <  2:3257551/91‑1 (MQ=255)

                                            aTCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCt                                              <  1:2689932/91‑1 (MQ=255)

                                             tCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTg                                             <  1:2136283/91‑1 (MQ=255)

                                             tCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTg                                             <  1:2100829/91‑1 (MQ=255)

                                             tCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTg                                             <  1:3250058/91‑1 (MQ=255)

                                              cGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGt                                            >  1:1445973/1‑91 (MQ=255)

                                              cGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGt                                            <  2:2066297/91‑1 (MQ=255)

                                              cGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGGATCAATTCCTGt                                            >  2:3503490/1‑91 (MQ=255)

                                              cGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTATGCACCACGCGTATCATTTCCTGt                                            >  2:3665327/1‑91 (MQ=255)

                                              cGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TACATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGt                                            >  2:3359843/1‑91 (MQ=255)

                                              cGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TACATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGt                                            >  2:3359529/1‑91 (MQ=255)

                                                tAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTg                                          <  2:2360228/91‑1 (MQ=255)

                                                tAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTg                                          <  1:242136/91‑1 (MQ=255)

                                                 aaCGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGc                                         >  2:417670/1‑91 (MQ=255)

                                                  aCGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCt                                        >  2:1637319/1‑91 (MQ=255)

                                                   cGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTa                                       <  1:1570058/91‑1 (MQ=255)

                                                    gCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGTGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTgtttt                                      <  2:2249206/91‑5 (MQ=255)

                                                    gCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTaa                                      >  2:3009466/1‑91 (MQ=255)

                                                    gCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTaa                                      <  1:2169973/91‑1 (MQ=255)

                                                     ccATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTaaa                                     <  2:2811143/91‑1 (MQ=255)

                                                       aTGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaac                                   <  2:187546/91‑1 (MQ=255)

                                                        tGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaaca                                  <  1:440169/91‑1 (MQ=255)

                                                        tGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaaca                                  <  2:1592532/91‑1 (MQ=255)

                                                         gTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaacaa                                 <  1:3017639/91‑1 (MQ=255)

                                                          tAGCACTACCACGATACTGTCCGGCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaacaac                                <  2:3200896/91‑1 (MQ=255)

                                                          tAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaacaac                                <  1:2663124/91‑1 (MQ=255)

                                                           aGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAacaaca                               >  2:3089709/1‑91 (MQ=255)

                                                               aTACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCAt                           <  1:3914558/91‑1 (MQ=255)

                                                                tACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCAta                          <  2:3320993/91‑2 (MQ=255)

                                                                 aCCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGt                         <  1:1382660/91‑1 (MQ=255)

                                                                  ccACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTa                        <  1:329541/91‑1 (MQ=255)

                                                                  ccACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTa                        >  1:2996478/1‑91 (MQ=255)

                                                                   cccGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTAt                       <  1:2546967/89‑1 (MQ=255)

                                                                   cACGGTACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCGCGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTAt                       <  2:1177212/91‑1 (MQ=255)

                                                                    aCGGTACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATg                      <  2:1432251/91‑1 (MQ=255)

                                                                    aCGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATg                      >  1:3437277/1‑91 (MQ=255)

                                                                     cGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGc                     <  1:1107506/91‑1 (MQ=255)

                                                                     cGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGc                     <  1:2206345/91‑1 (MQ=255)

                                                                       aTACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCa                   <  1:1754890/91‑1 (MQ=255)

                                                                         aCTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCAtt                 <  1:2343177/91‑1 (MQ=255)

                                                                           tGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCa               >  2:1256979/1‑91 (MQ=255)

                                                                            gTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCAt              >  2:1983052/1‑91 (MQ=255)

                                                                            gTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCAt              >  1:357695/1‑91 (MQ=255)

                                                                             tCCGTCACCACGCGCGTA‑GGCATGCGCACTTGCGTCTGCACCCCGCGTATCATTTCCTGTTGCGAAAACAACAGCATGAATGGCATACAtg             <  2:2740762/91‑2 (MQ=255)

                                                                               cGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAac           <  1:505977/91‑1 (MQ=255)

                                                                               cGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAac           <  1:505964/91‑1 (MQ=255)

                                                                                 tCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAacac         <  2:2876330/91‑1 (MQ=255)

                                                                                 tCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAacac         <  2:537492/91‑1 (MQ=255)

                                                                                     gACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCttt     >  1:3178518/1‑91 (MQ=255)

                                                                                      aCTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTtta    <  1:1483563/91‑1 (MQ=255)

                                                                                      aCTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTtta    >  1:898140/1‑91 (MQ=255)

                                                                                      aCTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTcta    >  2:2464108/1‑91 (MQ=255)

GTCATAGGCACTTCAATTGTACCAATCAATCGTTGACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTA‑TGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATT  >  USA300TCH1516_ALE/2681860‑2682038

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.