BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2681949 =	134 (0.660)	10 (0.050)	7/150	NT	7.0%	coding (873/1278 nt)	mvaA	3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase
*	?	USA300TCH1516_ALE	2681984 =	142 (0.740)	10 (0.050)	7/150	NT	7.0%	coding (838/1278 nt)	mvaA	3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase

Only 100 of 189 total aligned reads displayed.

GACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGCCAA  >  USA300TCH1516_ALE/2681894‑2682074

gACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGt                                                                                            <  1:3594015/91‑1 (MQ=255)

gACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGt                                                                                            <  1:3594234/91‑1 (MQ=255)

  cGATCTTGATCGAAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTAt                                                                                          >  1:3029416/1‑91 (MQ=255)

   gATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATc                                                                                         <  1:3186240/91‑1 (MQ=255)

   gATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATc                                                                                         <  1:1759696/91‑1 (MQ=255)

   gATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATc                                                                                         <  2:251752/91‑1 (MQ=255)

   aaaggtgttatgaatggcgtacatgctgttgttttagcaacaggaaatgactCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATc                                                                                         >  2:3714966‑M1/53‑91 (MQ=255)

     tCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCAt                                                                                       <  1:3409033/91‑1 (MQ=255)

     tCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCAt                                                                                       <  2:2772588/91‑1 (MQ=255)

      cTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCAtt                                                                                      <  2:3704382/91‑1 (MQ=255)

       ttGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCAttt                                                                                     <  1:2457290/91‑1 (MQ=255)

       ttGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCAttt                                                                                     <  2:3135118/91‑1 (MQ=255)

        tGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTc                                                                                    <  1:715758/91‑1 (MQ=255)

          aTCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCt                                                                                  <  2:3257551/91‑1 (MQ=255)

          aTCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCt                                                                                  <  1:2689932/91‑1 (MQ=255)

           tCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTg                                                                                 <  1:2136283/91‑1 (MQ=255)

           tCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTg                                                                                 <  1:2100829/91‑1 (MQ=255)

            cGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGt                                                                                >  1:1445973/1‑91 (MQ=255)

            cGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGt                                                                                <  2:3267237/91‑1 (MQ=255)

            cGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGGATCAATTCCTGt                                                                                >  2:3503490/1‑91 (MQ=255)

            cGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATACATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGt                                                                                >  2:3359068/1‑91 (MQ=255)

            cGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATACATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGt                                                                                >  2:3359843/1‑91 (MQ=255)

              tAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTg                                                                              <  2:2360228/91‑1 (MQ=255)

               aaCGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGc                                                                             >  2:417670/1‑91 (MQ=255)

                aCGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCt                                                                            >  2:1637319/1‑91 (MQ=255)

                 cGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTa                                                                           <  1:1570058/91‑1 (MQ=255)

                  gCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGTGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTgtttt                                                                          <  2:2249205/91‑5 (MQ=255)

                  gCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTaa                                                                          >  2:3009466/1‑91 (MQ=255)

                  gCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTaa                                                                          <  1:2169973/91‑1 (MQ=255)

                  gCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTaa                                                                          >  2:639429/1‑91 (MQ=255)

                   ccATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTaaa                                                                         <  2:2811143/91‑1 (MQ=255)

                     aTGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaac                                                                       <  2:187546/91‑1 (MQ=255)

                      tGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaaca                                                                      <  2:1592532/91‑1 (MQ=255)

                      tGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaaca                                                                      <  1:440169/91‑1 (MQ=255)

                        tAGCACTACCACGATACTGTCCGGCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaacaac                                                                    <  2:3200896/91‑1 (MQ=255)

                        tAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaacaac                                                                    <  2:3620432/91‑1 (MQ=255)

                        tAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAaacaac                                                                    <  1:2663124/91‑1 (MQ=255)

                         aGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAacaaca                                                                   >  2:3089709/1‑91 (MQ=255)

                             aTACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCAt                                                               <  1:3914558/91‑1 (MQ=255)

                               aCCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGt                                                             <  1:2094366/91‑1 (MQ=255)

                               aCCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGt                                                             <  1:1382660/91‑1 (MQ=255)

                                ccACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTa                                                            <  1:329541/91‑1 (MQ=255)

                                ccACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTa                                                            >  1:2996952/1‑91 (MQ=255)

                                 cACGGTACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCGCGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTAt                                                           <  2:1177212/91‑1 (MQ=255)

                                 cACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTAt                                                           <  1:2547143/91‑1 (MQ=255)

                                 cACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTAt                                                           <  1:2285239/91‑1 (MQ=255)

                                  aCGGTACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATg                                                          <  2:1432251/91‑1 (MQ=255)

                                  aCGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATg                                                          >  1:3437277/1‑91 (MQ=255)

                                   cGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGc                                                         <  1:2206345/91‑1 (MQ=255)

                                   cGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGc                                                         <  1:1107506/91‑1 (MQ=255)

                                         tGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGCATGCCATTCa                                                   >  2:1256926/1‑91 (MQ=255)

                                          gTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCAt                                                  >  1:357695/1‑91 (MQ=255)

                                          gTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCAt                                                  >  2:1983052/1‑91 (MQ=255)

                                          gTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTACCATTTCCTGTCGCTAAAACAACAGCATGTATGCCATTcct                                                  >  2:288135/1‑89 (MQ=255)

                                           tCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATa                                                 <  1:608439/91‑1 (MQ=255)

                                           tCCGTCACCACGCGCGTAGGCATGCGCACTTGCGTCTGCACCCCGCGTATCATTTCCTGTTGCGAAAACAACAGCATGAATGGCATACAtg                                                 <  2:2740762/91‑2 (MQ=255)

                                             cGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAac                                               >  1:3239741/1‑91 (MQ=255)

                                             cGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAac                                               <  1:505977/91‑1 (MQ=255)

                                             cGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAac                                               <  1:505964/91‑1 (MQ=255)

                                               tCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAacac                                             <  2:537492/91‑1 (MQ=255)

                                                    aCTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTtta                                        <  1:1483287/91‑1 (MQ=255)

                                                       cgcgtggtgcagaagcaagtgcgcatgcatacgcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTttatta                                     >  1:2324730‑M2/36‑91 (MQ=255)

                                                         CGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTAtg                                   >  1:1266989‑M1/1‑91 (MQ=255)

                                                           tggtgcagaagcaagtgcgcatgcatacgcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTAtgtg                                 >  1:2809854‑M2/32‑91 (MQ=255)

                                                            ggtgcagaagcaagtgcgcatgcatacgcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATgtgt                                >  1:2336302‑M2/31‑91 (MQ=255)

                                                            atgcatgcGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATgtgt                                >  1:2410360/1‑91 (MQ=255)

                                                            atgcatgcGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATgtgt                                <  2:2312879/91‑1 (MQ=255)

                                                             tgcagaagcaagtgcgcatgcaccacgcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACCCCTTCATTATGCGtt                               >  2:3798008‑M2/30‑91 (MQ=255)

                                                              gcatgcGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtg                              <  2:1142936/91‑1 (MQ=255)

                                                               gcagaagcaagtgcgcatgcatacgcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATGATGtgctgc                             >  1:3552413‑M2/28‑91 (MQ=255)

                                                               catgcGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtgc                             <  2:1187098/91‑1 (MQ=255)

                                                                 tgcGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtgctg                           >  1:3886921/1‑91 (MQ=255)

                                                                 agaagcaagtgcgcatgcatacgcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtgctg                           >  2:2496480‑M2/26‑91 (MQ=255)

                                                                 agaagcaagtgcgcatgcatacgcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtgctg                           >  2:708288‑M2/26‑91 (MQ=255)

                                                                  gcgcTCTTTCTTCTTCACCACGCGTATCATTTTCTGTTGCTAAAACATCAGCATGTATGCTTTTCATAACACTTTTTTTATGTGTttctgc                          >  2:902166/1‑91 (MQ=255)

                                                                  gcgcACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtgctgc                          <  1:3827775/91‑1 (MQ=255)

                                                                  gcgcACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTtgctgc                          <  1:1719511/91‑1 (MQ=255)

                                                                   cgcACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACCGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCa                         >  2:2169996/1‑91 (MQ=255)

                                                                     cACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACg                       <  2:1219605/91‑1 (MQ=255)

                                                                        ttGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATg                    <  2:2593588/91‑1 (MQ=255)

                                                                         tGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGa                   >  1:2984470/1‑91 (MQ=255)

                                                                          gCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGaa                  >  2:957777/1‑91 (MQ=255)

                                                                          gCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGaa                  <  1:3204473/91‑1 (MQ=255)

                                                                           cTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAat                 <  1:3290426/91‑1 (MQ=255)

                                                                            ttCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAata                <  1:3021853/91‑1 (MQ=255)

                                                                             tCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAatat               <  1:3167872/91‑1 (MQ=255)

                                                                             tCTGCACCACGCGCATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAatat               <  2:3491827/91‑1 (MQ=255)

                                                                              cTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATc              <  2:3457373/91‑1 (MQ=255)

                                                                              cTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATc              <  2:1341242/91‑1 (MQ=255)

                                                                                gCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTa            >  1:866817/1‑91 (MQ=255)

                                                                                 caccacGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTAc           <  2:269291/91‑1 (MQ=255)

                                                                                 caccacGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTAc           <  2:1401273/91‑1 (MQ=255)

                                                                                   ccacGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACtt         <  2:3348682/91‑1 (MQ=255)

                                                                                    cacGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTg        <  1:949447/91‑1 (MQ=255)

                                                                                     acgcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTgg       <  1:1855384‑M2/86‑1 (MQ=255)

                                                                                      cgcgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTggg      >  1:2523600‑M2/5‑91 (MQ=255)

                                                                                      cgcgTATCATGTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTggg      <  2:1473518‑M2/87‑1 (MQ=255)

                                                                                        cgTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGcc    <  1:3714511‑M2/89‑1 (MQ=255)

                                                                                         gTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGCCa   >  2:2062539‑M2/2‑91 (MQ=255)

                                                                                          tATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACAATGAATATCTACTTGGGCCaa  <  2:3719981/91‑1 (MQ=255)

GACGATCTTGATCGTAACGCCATGTAGCAATACCACGATACTGTCCGTCACGACTCGCGTATGCATGCGCACTTGCTTCTGCACCACGCGTATCATTTCCTGTTGCTAAAACAACAGCATGTATGCCATTCATAACACCTTTATTATGTGTTGCTGCACGATGAATATCTACTTGGGCCAA  >  USA300TCH1516_ALE/2681894‑2682074

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.