| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_012417 | 1 = | 0 (0.000) | 31 (0.020) +ATAAAAAGAC |
8/140 | NT | 5.5% | intergenic (–/‑279) | –/USA300HOU_RS14890 | –/replication protein |
| ? | NC_012417 | 3071 = | 1228 (0.590) | intergenic (‑397/–) | USA300HOU_RS14900/– | hypothetical protein/– | |||||
Only 100 of 2305 total aligned reads displayed.
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGA > NC_012417/1‑91 | ttttttcgtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatat < 2:2940457‑M1/2‑1 (MQ=255)tttgtgcgtgaaaggaatatttgacaataaaagaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatat > 1:3384775‑M1/90‑91 (MQ=255)tttgtgcgtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatat < 1:1746351‑M1/2‑1 (MQ=255) ttgtgcgtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATg < 2:402253‑M1/3‑1 (MQ=255) tgtgcgtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatattg > 1:1982361‑M1/88‑89 (MQ=255) tgtgcgtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGc > 2:1464398‑M1/88‑91 (MQ=255) gcgtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAat > 1:1076222‑M1/85‑91 (MQ=255) cgtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAata > 2:1278135‑M1/84‑91 (MQ=255) cgtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAata < 1:2315553‑M1/8‑1 (MQ=255) cgtgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttatatATGCAata < 1:3584705‑M1/8‑1 (MQ=255) tgaaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAAtata < 2:678571‑M1/10‑1 (MQ=255) tgaaaggaaaaattgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAAtata > 2:3144978‑M1/82‑91 (MQ=255) aaaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATataat < 1:2538331‑M1/12‑1 (MQ=255) aaggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATataata > 2:1604492‑M1/79‑91 (MQ=255) aggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAAtac < 2:366375‑M1/14‑1 (MQ=255) ggaaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAAtact > 1:3789187‑M1/77‑91 (MQ=255) aaaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAAtactac < 2:557022‑M1/17‑1 (MQ=255) aaatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATactact < 1:3868136‑M1/18‑1 (MQ=255) aatttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATActacta > 1:1861896‑M1/73‑91 (MQ=255) tttgacagtaaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGa > 2:3504410‑M1/71‑91 (MQ=255) tttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATGCTTCTagt > 1:830538‑M1/71‑90 (MQ=255) tttgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGa < 2:3084881‑M1/21‑1 (MQ=255) tgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAg < 1:2809960‑M1/23‑1 (MQ=255) tgacaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAg > 2:3732179‑M1/69‑91 (MQ=255) acactaacaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggactttttatATGCAATATAATACTACTAGAAGta < 2:2369878‑M1/25‑1 (MQ=255) acaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGta < 2:268956‑M1/25‑1 (MQ=255) acaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGta < 1:3650705‑M1/25‑1 (MQ=255) acaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGta < 1:2748429‑M1/25‑1 (MQ=255) acaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGta < 1:951982‑M1/25‑1 (MQ=255) acaataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGta < 1:2181063‑M1/25‑1 (MQ=255) caataaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGtat < 1:897728‑M1/26‑1 (MQ=255) aaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAAcc > 2:938981‑M1/62‑91 (MQ=255) aaaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAAcc > 2:767747‑M1/62‑91 (MQ=255) aaaaaaccccagctatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAAcc < 1:3055433‑M1/30‑1 (MQ=255) aaaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCg > 2:2539858‑M1/61‑91 (MQ=255) aaaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGa > 2:380160‑M1/60‑91 (MQ=255) aaaccgcagttatattattaaggtgtcggatcttaaataatactgggggtctttttatATGCAATATAATGCTACTAGAAGTATAACCGaa > 2:3308041‑M1/59‑91 (MQ=255) aaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGaa < 1:3210637‑M1/33‑1 (MQ=255) aaaccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGaa < 1:2935474‑M1/33‑1 (MQ=255) gacccccagtattatttaagattcgacaccttaataatataactggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGaaa < 1:1244843‑M1/34‑1 (MQ=255) accccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGaaaa > 2:2597208‑M1/57‑91 (MQ=255) ccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAAt < 2:1983472‑M1/36‑1 (MQ=255) ccccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAAt < 1:2035288‑M1/36‑1 (MQ=255) ccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCa < 2:2995586‑M1/38‑1 (MQ=255) ccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCa < 1:1001595‑M1/38‑1 (MQ=255) ccagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCa < 1:1929861‑M1/38‑1 (MQ=255) cagttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCaa < 2:1836612‑M1/39‑1 (MQ=255) agttatgttattaaggtgtcgattcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAg > 2:2134659‑M1/52‑91 (MQ=255) agttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAg > 2:1683078‑M1/52‑91 (MQ=255) agttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAg > 2:2770544‑M1/52‑91 (MQ=255) agttatattattaaggtgtcgaaccttaaataatactgggggtcttgttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAg < 1:3131688‑M1/40‑1 (MQ=255) gttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGa < 2:3561276‑M1/41‑1 (MQ=255) gttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGa > 1:119678‑M1/51‑91 (MQ=255) gttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGa < 2:1345509‑M1/41‑1 (MQ=255) ttatattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGat > 2:2205598‑M1/50‑91 (MQ=255) attatttaagattcgacaccttaataatataactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGata < 1:393753‑M1/43‑1 (MQ=255) atattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGataa < 2:2276918‑M1/44‑1 (MQ=255) tattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGataat < 1:3523711‑M1/45‑1 (MQ=255) tattattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGataat < 2:1910024‑M1/45‑1 (MQ=255) ttatttaagattcgacaccttaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGAtaataa < 1:3317566‑M1/47‑1 (MQ=255) ttattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGAtaataa > 1:1789353‑M1/45‑91 (MQ=255) ttattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGAtaataa > 1:1679677‑M1/45‑91 (MQ=255) ttattaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGAtaataa < 1:2126045‑M1/47‑1 (MQ=255) attaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATaaaa > 1:2876014‑M1/43‑91 (MQ=255) attaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATaaaa > 1:2241585‑M1/43‑91 (MQ=255) attaaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATaaaa < 2:1770461‑M1/49‑1 (MQ=255) taaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACg > 1:3465228‑M1/41‑91 (MQ=255) caaggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACg < 2:31935‑M1/51‑1 (MQ=255) aggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGtt < 1:2598143‑M1/53‑1 (MQ=255) aggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGtt > 1:1144718‑M1/39‑91 (MQ=255) aggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGtt < 1:2397089‑M1/53‑1 (MQ=255) aggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGtt > 2:3377630‑M1/39‑91 (MQ=255) ggtgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTa > 1:3253998‑M1/38‑91 (MQ=255) tgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTaaa < 1:772542‑M1/56‑1 (MQ=255) tgtcgaatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTaaa < 1:3748959‑M1/56‑1 (MQ=255) aatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGata < 1:2991662‑M1/61‑1 (MQ=255) aatcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGata > 1:1602330‑M1/31‑91 (MQ=255) atcttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACGGAAAATCAAGATAATAAAACGTTAAAAGatat > 2:3887546‑M1/30‑91 (MQ=255) ttaaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGAc > 2:1099470‑M1/27‑91 (MQ=255) aaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGTTATGACGa < 2:3442875‑M1/67‑1 (MQ=255) aaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGa < 2:472870‑M1/67‑1 (MQ=255) aaataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGa < 1:1367956‑M1/67‑1 (MQ=255) ataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGaaa < 1:1524613‑M1/69‑1 (MQ=255) ataatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGaaa < 1:557967‑M1/69‑1 (MQ=255) taatactgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGaaaa > 1:63931‑M1/22‑91 (MQ=255) actgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTgg < 2:1534986‑M1/74‑1 (MQ=255) actgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTgg < 2:861505‑M1/74‑1 (MQ=255) ctgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTggg < 1:1411211‑M1/75‑1 (MQ=255) ctgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTggg > 2:1013105‑M1/17‑91 (MQ=255) ctgggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTggg > 1:489334‑M1/17‑91 (MQ=255) ggggtctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGaaa > 2:1395808‑M1/14‑91 (MQ=255) tctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAaacaac < 1:1305597‑M1/82‑1 (MQ=255) tctttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAaacaac > 1:2484340‑M1/10‑91 (MQ=255) tttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGc > 1:723705‑M1/8‑91 (MQ=255) ttttatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGcc < 1:2672293‑M1/85‑1 (MQ=255) tatATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCAt < 2:2082154‑M1/88‑1 (MQ=255) atATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATg > 2:2846844‑M1/3‑91 (MQ=255) atATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATg > 2:2459460‑M1/3‑91 (MQ=255) tATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATgg > 2:1195591‑M1/2‑91 (MQ=255) aTGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGga < 2:2031198/91‑1 (MQ=255) | ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ATGCAATATAATACTACTAGAAGTATAACCGAAAATCAAGATAATAAAACGTTAAAAGATATGACGAAAAGTGGGAAACAACGCCCATGGA > NC_012417/1‑91 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |