BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	42499 =	235 (1.150)	19 (0.120) +ATAAATTTTTTGATTATTTT	9/120	NT	17.8%	coding (1467/1524 nt)	USA300TCH1516_00035	hypothetical protein
*	?	USA300TCH1516_ALE	= 1912410	0 (0.000)	19 (0.120) +ATAAATTTTTTGATTATTTT	9/120	NT	17.8%	coding (532/609 nt)	USA300HOU_RS15290	hypothetical protein

Only 100 of 274 total aligned reads displayed.

ACAAGTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTT  >  USA300TCH1516_ALE/42409‑42589

  aaGTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGaaa                                                                                          >  1:1527280/1‑91 (MQ=255)

      tGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAg                                                                                      >  2:1192321/1‑91 (MQ=255)

      tGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAg                                                                                      <  1:31737/91‑1 (MQ=255)

        tAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGAc                                                                                    <  2:3945949/91‑1 (MQ=255)

        tAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTAAAAAAAAAAAAAAAGAc                                                                                    <  2:2966378/91‑1 (MQ=255)

         agagCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACa                                                                                   >  1:256692/1‑91 (MQ=255)

             caagcaGAATTAATGGCAAGTCAGCAATAAAAAAATAAAGCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGGGAAAAAAGACAAttt                                                                               <  1:1536254/91‑1 (MQ=255)

              aagcaGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTc                                                                              >  1:38601/1‑91 (MQ=255)

              aagcaGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTc                                                                              <  1:3366692/91‑1 (MQ=255)

               agcaGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCt                                                                             <  2:709986/91‑1 (MQ=255)

                 caGAATTAATGGCAAGTAAAAAAAAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAt                                                                           <  2:1860125/91‑1 (MQ=255)

                 aaGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTAAATAAGTAAAAAAAGACAATTTCTAt                                                                           <  2:2714485/90‑1 (MQ=255)

                  aGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTAtt                                                                          >  1:3049365/1‑91 (MQ=255)

                   gAATTAATGGCACGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTAGGATAAGTGAAAAAAGACAATTTCTATTg                                                                         >  1:3025293/1‑91 (MQ=255)

                   gAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTg                                                                         >  1:1733729/1‑91 (MQ=255)

                    aaTTATTGGCAAGTCAACAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTagaaa                                                                        <  2:3643721/91‑5 (MQ=255)

                    aaTTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGa                                                                        >  2:239090/1‑91 (MQ=255)

                    aaTTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGa                                                                        >  2:2992535/1‑91 (MQ=255)

                     aTTAATGGCAAGTCAGCAATAAAAAATTAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACTATTTCTATTGaa                                                                       >  2:3282938/1‑91 (MQ=255)

                          tGGCAAGTCAGCAATAAAAAAAATTATAATAATGAGTCCGGGATATAAAGTTTTAAAAAAAAAAAAAAAAGACAATTTCTATTGAaataat                                                                  <  2:3674976/91‑1 (MQ=255)

                             cAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAACTAAtata                                                               >  1:1971369/1‑91 (MQ=255)

                             aatggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTATTGAAATAAtata                                                               >  2:3704203‑M1/62‑91 (MQ=255)

                              atggcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTATTGAAATAATATAg                                                              >  1:919242‑M1/61‑91 (MQ=255)

                               aGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGa                                                             >  1:2009405/1‑91 (MQ=255)

                                 tCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGaaa                                                           <  1:2483492/91‑1 (MQ=255)

                                 gcacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTATTGAAATAATATAGaaa                                                           >  2:2922004‑M1/58‑91 (MQ=255)

                                 acAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGaaa                                                           <  2:563459/90‑1 (MQ=255)

                                 acAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGaaa                                                           <  2:3337401/90‑1 (MQ=255)

                                  cAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAAt                                                          <  2:778699/91‑1 (MQ=255)

                                  cAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAAt                                                          <  2:1314327/91‑1 (MQ=255)

                                  aacttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTATTGAAATAATATAGAAAt                                                          >  2:1663003‑M1/57‑91 (MQ=255)

                                   acttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTATTGAAATAATATAGAAAtt                                                         >  2:73521‑M1/56‑91 (MQ=255)

                                   aGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAAtt                                                         >  1:2734186/1‑91 (MQ=255)

                                   aGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAAtt                                                         >  1:2734156/1‑91 (MQ=255)

                                   aGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAAtt                                                         <  1:2367623/91‑1 (MQ=255)

                                   aGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAAtt                                                         <  1:2366844/91‑1 (MQ=255)

                                    gCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTg                                                        >  2:2299312/1‑91 (MQ=255)

                                    gCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTg                                                        >  1:1347625/1‑91 (MQ=255)

                                    cttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTATAGAAATAATATAGAAATTg                                                        >  2:2041147‑M1/55‑91 (MQ=255)

                                     ttaatataagaaaagtagtagctcaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGt                                                       >  2:1545376‑M1/54‑91 (MQ=255)

                                     cAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGt                                                       >  1:1596133/1‑91 (MQ=255)

                                     cAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGt                                                       >  1:1909300/1‑91 (MQ=255)

                                      aaTAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTgaa                                                      >  2:2630436/1‑89 (MQ=255)

                                      aaTAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTc                                                      >  2:2089918/1‑91 (MQ=255)

                                       aTAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCt                                                     >  2:900866/1‑91 (MQ=255)

                                       aTAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCt                                                     >  2:769314/1‑91 (MQ=255)

                                          aaaaaaTAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCtttt                                                  >  1:348422/1‑91 (MQ=255)

                                            aagaaaagtagtagcttaacgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCtttttt                                                >  2:2131496‑M1/47‑91 (MQ=255)

                                             aaataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTta                                               <  2:1733377/91‑1 (MQ=255)

                                             aaataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTta                                               <  1:2640536/91‑1 (MQ=255)

                                             aaataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTta                                               <  1:2861099/91‑1 (MQ=255)

                                             aaataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTta                                               <  1:1005927/91‑1 (MQ=255)

                                              gaaaagtagtagctcagcgagctgaaaataatcaaaaaatttatAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTtat                                              >  2:3779251‑M1/45‑91 (MQ=255)

                                              aataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAATACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTtat                                              <  2:3245608/91‑1 (MQ=255)

                                              aataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTtat                                              <  1:589507/91‑1 (MQ=255)

                                              aataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTtat                                              <  1:3414922/91‑1 (MQ=255)

                                              aataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTtat                                              >  2:20784/1‑91 (MQ=255)

                                               ataaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTtata                                             <  1:1259657/91‑1 (MQ=255)

                                                taaatCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATaa                                            <  1:315734/91‑1 (MQ=255)

                                                   ctCATAATGAGTCCGGGACATAAAGTTCTTGGATAATTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAAtt                                         <  2:3913477/90‑1 (MQ=255)

                                                   atCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAAtt                                         >  2:759893/1‑91 (MQ=255)

                                                   atCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAAtt                                         >  1:884206/1‑91 (MQ=255)

                                                    tCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAAttt                                        >  2:141352/1‑91 (MQ=255)

                                                     cATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAAtttt                                       >  1:1155956/1‑91 (MQ=255)

                                                         aTGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGa                                   >  1:1398082/1‑91 (MQ=255)

                                                           gAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGatt                                 <  1:136633/91‑1 (MQ=255)

                                                             gTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGattat                               >  1:240345/1‑91 (MQ=255)

                                                              tCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGattatt                              >  1:1725479/1‑91 (MQ=255)

                                                               ccGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTAttt                             <  2:1911440/91‑1 (MQ=255)

                                                               ccGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTAttt                             >  2:602525/1‑91 (MQ=255)

                                                                cGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGATATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTAtttt                            <  2:3050923/91‑1 (MQ=255)

                                                                cGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAACTAATATAGAAACTGTCTCTTCTATAAATTTTTTGATTAtttt                            >  2:1145678/1‑91 (MQ=255)

                                                                cGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTAtttt                            <  1:74182/91‑1 (MQ=255)

                                                                cGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTAtttt                            >  1:363860/1‑91 (MQ=255)

                                                                  ggACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCa                          >  2:2469554/1‑91 (MQ=255)

                                                                  ggACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGACTATTTTATAAATTTTTTGATTATTTTCa                          >  2:666060/1‑91 (MQ=255)

                                                                   gACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAg                         <  2:1096575/91‑1 (MQ=255)

                                                                    aCATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGc                        <  2:460671/91‑1 (MQ=255)

                                                                    aCATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGc                        >  2:3409876/1‑91 (MQ=255)

                                                                     cATATAGTTCTTGGATAAGTGAAAAAAGACAATTTCGATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCt                       <  2:3839974/91‑1 (MQ=255)

                                                                     cATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCt                       <  1:2067395/91‑1 (MQ=255)

                                                                         aaGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGCAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGtt                   >  1:3333558/1‑91 (MQ=255)

                                                                          ggTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTg                  <  2:1073966/90‑1 (MQ=255)

                                                                          aGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTg                  >  1:2138218/1‑91 (MQ=255)

                                                                            ttCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAg                >  2:2891302/1‑91 (MQ=255)

                                                                            ttCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAg                >  2:1234808/1‑91 (MQ=255)

                                                                              cTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGct              >  1:1055746/1‑91 (MQ=255)

                                                                              cTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGct              <  1:3766879/91‑1 (MQ=255)

                                                                               ttGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGcta             >  1:99548/1‑91 (MQ=255)

                                                                               ttGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGcta             <  2:1941407/91‑1 (MQ=255)

                                                                                tGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctac            <  1:444217/91‑1 (MQ=255)

                                                                                tGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctac            <  1:3047360/91‑1 (MQ=255)

                                                                                 ggATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact           <  1:825645/91‑1 (MQ=255)

                                                                                 ggATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact           >  1:762029/1‑91 (MQ=255)

                                                                                 ggATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact           <  1:2707287/91‑1 (MQ=255)

                                                                                 ggATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGctact           >  2:3578051/1‑91 (MQ=255)

                                                                                   aTAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCtactac         <  1:536321/91‑1 (MQ=255)

                                                                                   aTAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCtactac         <  1:1888807/91‑1 (MQ=255)

                                                                                   aTAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCtactac         >  1:1785825/1‑91 (MQ=255)

                                                                                        tGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTc    <  2:2617915/91‑1 (MQ=255)

ACAAGTTGTAGAGCAAGCAGAATTAATGGCAAGTCAGCAATAAAAAAATAAATCATAATGAGTCCGGGACATAAAGTTCTTGGATAAGTGAAAAAAGACAATTTCTATTGAAATAATATAGAAATTGTCTTTTTTATAAATTTTTTGATTATTTTCAGCTCGTTGAGCTACTACTTTTCTT  >  USA300TCH1516_ALE/42409‑42589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.