| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 42499 = | 235 (1.150) | 19 (0.120) +ATAAATTTTTTGATTATTTT |
9/120 | NT | 17.8% | coding (1467/1524 nt) | USA300TCH1516_00035 | hypothetical protein |
| ? | USA300TCH1516_ALE | = 1912410 | 0 (0.000) | coding (532/609 nt) | USA300HOU_RS15290 | hypothetical protein | |||||
ACGTCAGTTCGAGGAATAAATAAAGTTAAACGAGAGCTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAA‑TAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTA > USA300TCH1516_ALE/1912320‑1912477 | aCGTCAGTTCGAGGAATAAATAAAGTTAAACGAGAGCTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAA‑TAGCAGCTCAACGAGCTg < 1:1611225/91‑1 (MQ=32) cGTCAGTTCGAGGAATAAATAAAGTTAAACGAGAGCTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAA‑TAGCAGCTCAACGAGCTGt < 2:2996323/91‑1 (MQ=31) aaTGGCACTTAATATAAGAAAAG‑TAGTAGCTCAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatata > 2:329138‑M2/1‑41 (MQ=255) aaTGGCACTTAATATAAGAAAAG‑TAGTAGCTCAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatata > 2:3704203‑M2/1‑41 (MQ=255) aaTAGCACTTAATATAAGAAAAG‑TAGTAGCTCAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatata > 2:3831091‑M2/1‑41 (MQ=255) aTGGCACTTAATATAAGAAAAG‑TAGTAGCTCAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatatag > 1:919242‑M2/1‑40 (MQ=255) gCACTTAATATAAGAAAAG‑TAGTAGCTCAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatatagaaa > 2:1984925‑M2/1‑37 (MQ=255) gCACTTAATATAAGAAAAG‑TAGTAGCTCAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatatagaaa > 2:2921893‑M2/1‑37 (MQ=255) gCACTTAATATAAGAAAAG‑TAGTAGCTCAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatatagaaa > 2:2922004‑M2/1‑37 (MQ=255) cACTTAATATAAGAAAAG‑TAGTAGCTCAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatatagaaat > 2:3021596‑M2/1‑36 (MQ=255) aacTTAATATAAGAAAAG‑TAGTAGCTCAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatatagaaat > 2:1663003‑M2/2‑36 (MQ=255) aCTTAATATAAGAAAAG‑TAGTAGCTCAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatatagaaatt > 2:73521‑M2/1‑35 (MQ=255) aCTTAATATAAGAAAAG‑TAGTAGCTCAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatatagaaatt > 2:73485‑M2/1‑35 (MQ=255) aCTTAATATAAGAAAAG‑TAGTAGCTCAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatatagaaatt > 2:506469‑M2/1‑35 (MQ=255) cTTAATATAAGAAAAG‑TAGTAGCTCAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctatagaaataatatagaaattg > 2:2041147‑M2/1‑34 (MQ=255) ttAATATAAGAAAAG‑TAGTAGCTCAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatatagaaattgt > 2:766059‑M2/1‑33 (MQ=255) ttAATATAAGAAAAG‑TAGTAGCTCAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatatagaaattgt > 2:1545376‑M2/1‑33 (MQ=255) taAGAAAAG‑TAGTAGCTCAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatatagaaattgtcttttt > 2:2145829‑M2/1‑27 (MQ=255) aaGAAAAG‑TAGTAGCTTAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatatagaaattgtctttttt > 2:2131496‑M2/1‑26 (MQ=255) aaGAAAAG‑TAGTAGCTCAACGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatatagaaattgtctttttt > 2:2980946‑M2/1‑26 (MQ=255) gAAAAGTAGTAGCTCAGCGAGCTGaaaataatcaaaaaatttataaaaaagacaatttctattgaaataatatagaaattgtcttttttat > 2:3779251‑M2/1‑24 (MQ=255) | ACGTCAGTTCGAGGAATAAATAAAGTTAAACGAGAGCTAGGTTTTGTATTAATGGCACTTAATATAAGGAAAA‑TAGCAGCTCAACGAGCTGTACATTATAAAATACATATCAAAAAAGCTGATTTCTATCAAATAATTAATAGAAATCAGCTTTTTTA > USA300TCH1516_ALE/1912320‑1912477 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |