| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 127837 = | 148 (0.730) | 8 (0.050) | 6/138 | NT | 5.7% | intergenic (+57/+272) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A |
| ? | USA300TCH1516_ALE | 127883 = | 138 (0.790) | intergenic (+103/+226) | lctP_1/spa | L‑lactate permease/Immunoglobulin G‑binding protein A | |||||
Only 100 of 268 total aligned reads displayed.
TGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTG > USA300TCH1516_ALE/127747‑127927 | tgtTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGA > 2:2682158‑M1/1‑91 (MQ=255) ttttattttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatatatgacatttttaggcattaaaaaa > 1:2973871‑M1/90‑91 (MQ=255) gtTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAA > 1:2290589‑M1/1‑91 (MQ=255) gtTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAA > 1:1799433‑M1/1‑91 (MQ=255) tttGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAAT < 1:2336830‑M1/91‑1 (MQ=255) tttGGACATTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAAT < 1:1958653‑M1/91‑1 (MQ=255) ttGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATC < 1:423466‑M1/91‑1 (MQ=255) ttGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATC < 2:101786‑M1/91‑1 (MQ=255) tGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCG < 1:3572032‑M1/91‑1 (MQ=255) tGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCG < 1:3908657‑M1/91‑1 (MQ=255) tGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCG > 2:1302764‑M1/1‑91 (MQ=255) ttttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatatatgacatttttaggcattaaaaAATCGaa < 1:95406‑M1/7‑1 (MQ=255) ttttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatatatgacatttttaggcattaaaaAATCGaa < 1:2887257‑M1/7‑1 (MQ=255) tttacttacttttctaaataacttctgaaacgcctcaacactttctactctgattacatatatgacatttttaggcattcaaaAATCGAAc < 2:3314415‑M1/8‑1 (MQ=255) tttacttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatatatgacatttttaggcattaaaaAATCGAAc < 1:1405734‑M1/8‑1 (MQ=255) cGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACT > 2:3224633‑M1/1‑91 (MQ=255) acttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatatatgacatttttaggcattaaaaAATCGAACTAg > 2:1745299‑M1/81‑91 (MQ=255) acttacttttctaaacaacttctgaaacgcctcaacactttctactctgattacatatatgacatttttaggcattaaaaAATCGAACTAg < 1:1172385‑M1/11‑1 (MQ=255) ttATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGt > 2:524887/1‑91 (MQ=255) tataCTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTa < 1:3451457/91‑1 (MQ=255) aCTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGa > 1:2388647/1‑91 (MQ=255) aaCGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAAt > 2:1863672/1‑91 (MQ=255) aaTATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATg > 2:1131250/1‑91 (MQ=255) aaTATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATg < 1:3747535/91‑1 (MQ=255) aaTATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATg < 1:862237/91‑1 (MQ=255) aaTATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATg > 2:555478/1‑91 (MQ=255) tatTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAg > 2:2451574/1‑91 (MQ=255) tatTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAg < 1:1275008/91‑1 (MQ=255) tatTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAg < 2:1538035/91‑1 (MQ=255) tatTCTAAATATAAATAATGTTGTCACTAGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAg < 2:780118/91‑1 (MQ=255) ttCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCa > 1:1193911/1‑91 (MQ=255) ttCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCa < 1:3219317/91‑1 (MQ=255) ttCTAAATATAAATAAGGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCa < 1:1665254/91‑1 (MQ=255) cTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATc > 1:2374580/1‑91 (MQ=255) cTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATc < 1:149000/91‑1 (MQ=255) cTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATc > 2:2250680/1‑91 (MQ=255) cTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATc < 1:565350/91‑1 (MQ=255) taaatataaataATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCt < 2:2217847/91‑1 (MQ=255) taaatataaataATGTTATCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCt < 1:3383814/91‑1 (MQ=255) aaatataaataATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCtt > 1:2770097/1‑91 (MQ=255) aaatataaataATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCtt > 1:1145963/1‑91 (MQ=255) aaatataaataATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCtt < 1:3851239/91‑1 (MQ=255) aatataaataATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTg > 2:304144/1‑91 (MQ=255) aaacgcctcaacactttctactctgattacatatatgacattttaaagcaataaaaAATCGAACTAGTACGAAATGCAATGAGCATCTTGt > 2:1617329‑M1/57‑91 (MQ=255) tataAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTc > 2:939533‑M2/1‑90 (MQ=255) aacgcctcaacactttctactctgattacatatatgacatttttaggcattaaaaAATCGAACTAGTACGAAATGCAATGAGCATCTTGTc > 2:1069369‑M1/56‑91 (MQ=255) ataaataaTGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTct < 2:2076069‑M2/91‑3 (MQ=255) gcctcaacactttctactctgattacatatatgacatttttaggcattaaaaAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAg > 1:2507273‑M1/53‑91 (MQ=255) aaataaTGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctag < 1:3692457‑M2/91‑5 (MQ=255) aataatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGacaagatgctcattgcatttcgtactagt < 2:502386‑M1/91‑30 (MQ=255) aataatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGacaagatgctcattgcatttcgtactagt < 2:3788673‑M1/91‑30 (MQ=255) aataatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagt > 2:1341708‑M2/1‑86 (MQ=255) ataatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagtt > 1:2283514‑M2/1‑85 (MQ=255) ataatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagtt > 2:3752939‑M2/1‑85 (MQ=255) taatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGacaagatgctcattgcatttcgtactagttc < 1:3206873‑M1/91‑32 (MQ=255) aatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttcg < 2:371924‑M2/91‑9 (MQ=255) aatGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttcg > 1:2139344‑M2/1‑83 (MQ=255) atGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttcga > 1:1639144‑M2/1‑82 (MQ=255) aacactttctactctgattacatatatgacatttttaggcattaaaaAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGa > 1:3114909‑M1/48‑91 (MQ=255) gttgtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttcgatt > 1:3524347‑M2/1‑80 (MQ=255) gttgtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttcgatt > 1:3524073‑M2/1‑80 (MQ=255) gttgtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttcgatt > 1:3473864‑M2/1‑80 (MQ=255) gttgtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTctagttcgatt > 1:3473876‑M2/1‑80 (MQ=255) tgtCATTTGAATCCAAGTGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAtttt > 2:1221212/1‑91 (MQ=255) tgtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAtttt > 1:1740153/1‑91 (MQ=255) gtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAttttt > 1:783739/1‑91 (MQ=255) tCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAtttttt > 1:3513395/1‑91 (MQ=255) tCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAtctttt > 1:3296780/1‑91 (MQ=255) cACTTGGATTCAAATGACATTTTAAGTCTAATTATTCATGAATCGAACTAGacaagatgctcattgcatttcgtactagttcgattcatga < 1:3685973‑M1/91‑41 (MQ=255) cACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTCGTACGAAATGCAATGAGCATCTTGTCTATTTCGTTTTTTTa > 2:618336/1‑91 (MQ=255) cACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTa > 2:3265903/1‑91 (MQ=255) aCTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTaa < 1:283226/91‑1 (MQ=255) cTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAAt > 2:2796212/1‑91 (MQ=255) tGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGc < 2:1791903/91‑1 (MQ=255) gATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCt < 1:2070785/91‑1 (MQ=255) gATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCt < 1:532493/91‑1 (MQ=255) aTTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTa < 1:21335/91‑1 (MQ=255) ttCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTaa > 1:1447866/1‑91 (MQ=255) ttCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTaa < 2:2008814/91‑1 (MQ=255) tCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTaaa > 1:1311878/1‑91 (MQ=255) aaTGACATTTTAAATCTAATTATTCATGAATCGAACTAGTGCGAAATGCAATGAGCATCTTGTCTATCTCGATTTTTTAATGCCTAAAAAt > 2:3679615/1‑91 (MQ=255) aaTGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAAt > 2:3870499/1‑91 (MQ=255) tGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGt < 2:2740306/91‑1 (MQ=255) tGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGt > 2:891974/1‑91 (MQ=255) gACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTc < 2:3409173/91‑1 (MQ=255) ttAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCatatat < 2:1126551/91‑1 (MQ=255) aaTCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTa < 1:2962205/91‑1 (MQ=255) aaTCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTa > 1:84970/1‑91 (MQ=255) tAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCa < 2:216891/91‑1 (MQ=255) tAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCa > 1:1597586/1‑91 (MQ=255) ttattCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCagag < 2:3825018/91‑1 (MQ=255) attCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTa < 1:3833278/91‑1 (MQ=255) attCATGAATCGAACTAGTACGAAATGCAATGAACATGTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTa < 2:2593563/91‑1 (MQ=255) tCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGa > 2:801684/1‑91 (MQ=255) cATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGaa > 1:1202172/1‑91 (MQ=255) aTGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGaaa > 2:3593624/1‑91 (MQ=255) tGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAg < 1:2728750/91‑1 (MQ=255) gAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgt > 2:2179026/1‑91 (MQ=255) gAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgt > 2:1961756/1‑91 (MQ=255) gAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgt < 1:335906/91‑1 (MQ=255) | TGTTTGGACGTTTATACTAACGTTAATATTCTAAATATAAATAATGTTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTG > USA300TCH1516_ALE/127747‑127927 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |