BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	127837 =	148 (0.730)	8 (0.050)	6/138	NT	5.7%	intergenic (+57/+272)	lctP_1/spa	L‑lactate permease/Immunoglobulin G‑binding protein A
*	?	USA300TCH1516_ALE	127883 =	138 (0.790)	8 (0.050)	6/138	NT	5.7%	intergenic (+103/+226)	lctP_1/spa	L‑lactate permease/Immunoglobulin G‑binding protein A

Only 100 of 235 total aligned reads displayed.

TTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAA  >  USA300TCH1516_ALE/127793‑127973

 tgtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAtttt                                                                                           <  2:2187984/91‑1 (MQ=255)

 tgtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAtttt                                                                                           >  1:1740153/1‑91 (MQ=255)

  gtCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAttttt                                                                                          >  1:783739/1‑91 (MQ=255)

   tCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAtttttt                                                                                         >  1:3513340/1‑91 (MQ=255)

   tCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGAtctttt                                                                                         >  1:3296780/1‑91 (MQ=255)

    cACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTa                                                                                        >  2:3265903/1‑91 (MQ=255)

     aCTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTaa                                                                                       <  1:283226/91‑1 (MQ=255)

      cTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAAt                                                                                      >  2:2796212/1‑91 (MQ=255)

      cTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAAt                                                                                      <  1:818886/91‑1 (MQ=255)

       ttGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATg                                                                                     <  2:907967/91‑1 (MQ=255)

          gATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCt                                                                                  >  1:3054766/1‑91 (MQ=255)

          gATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCt                                                                                  <  1:2737493/91‑1 (MQ=255)

           aTTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTa                                                                                 <  1:21335/91‑1 (MQ=255)

           aTTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTa                                                                                 >  1:857444/1‑91 (MQ=255)

           aTTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTa                                                                                 <  2:2124339/91‑1 (MQ=255)

            ttCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTaa                                                                                >  1:1448000/1‑91 (MQ=255)

             tCAAATGACATTTTAATTCTAATTATTCATGAATCGAAGTAGTACGAAATGCAATGAGAGTCTTGTCTAGTTCGATTTTTTTATGGCTgaa                                                                               <  2:3774632/91‑1 (MQ=255)

             tCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTaaa                                                                               >  1:1311878/1‑91 (MQ=255)

             tCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTaaa                                                                               <  1:152565/91‑1 (MQ=255)

             tCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTaaa                                                                               >  2:176202/1‑91 (MQ=255)

              cAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTaaaa                                                                              <  2:2060511/91‑1 (MQ=255)

               aaaTGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTaaaaa                                                                             >  2:3808599/1‑91 (MQ=255)

                aaTGACATTTTAAATCTAATTATTCATGAATCGAACTAGTGCGAAATGCAATGAGCATCTTGTCTATCTCGATTTTTTAATGCCTAAAAAt                                                                            >  2:3679615/1‑91 (MQ=255)

                  tGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGt                                                                          >  2:891974/1‑91 (MQ=255)

                  tGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGt                                                                          >  1:704195/1‑91 (MQ=255)

                  tGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGt                                                                          <  2:2740306/91‑1 (MQ=255)

                   gACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTc                                                                         <  2:3409173/91‑1 (MQ=255)

                    aCATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCa                                                                        <  1:1191962/91‑1 (MQ=255)

                      aTTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCata                                                                      >  2:1107592/1‑91 (MQ=255)

                         ttAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCatatat                                                                   <  1:3847088/91‑1 (MQ=255)

                         ttAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCatatat                                                                   <  2:720201/91‑1 (MQ=255)

                         ttAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCATAAAAATGTCatatat                                                                   <  2:613861/91‑1 (MQ=255)

                                tAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAACTGTCATATATGTAATCa                                                            >  1:1597596/1‑91 (MQ=255)

                                tAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCa                                                            <  2:216891/91‑1 (MQ=255)

                                    tattCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGt                                                        <  2:1211683/91‑1 (MQ=255)

                                       tCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGa                                                     <  2:1015051/91‑1 (MQ=255)

                                        cATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGaa                                                    >  1:2377094/1‑91 (MQ=255)

                                        cATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGaa                                                    >  1:1202172/1‑91 (MQ=255)

                                         aTGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGaaa                                                   <  1:2370423/91‑1 (MQ=255)

                                          tGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAg                                                  >  1:2233077/1‑91 (MQ=255)

                                          tGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAg                                                  >  1:544932/1‑91 (MQ=255)

                                          tGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAg                                                  <  1:2728750/91‑1 (MQ=255)

                                           gAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgt                                                 <  1:335906/91‑1 (MQ=255)

                                           gAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgt                                                 >  2:3489118/1‑91 (MQ=255)

                                           gAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgt                                                 >  2:1940529/1‑91 (MQ=255)

                                            AATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgtg                                                >  1:2913792‑M1/1‑91 (MQ=255)

                                             atcgaactagacaagatgctcattgcatttcgtactagttcgatgTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgtgt                                               >  2:3890082‑M2/46‑91 (MQ=255)

                                             ATCGAGCTAATAATAAATGCAATGATCATTTTGTCTAGTTCGATTTTTTAATTCCTAAAAATGTCATATATGTAATCAGAGTAGAAAgtgt                                               >  2:18266‑M1/1‑91 (MQ=255)

                                              TCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGtt                                              >  1:3389881‑M1/1‑91 (MQ=255)

                                              TCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGtt                                              >  2:2941920‑M1/1‑91 (MQ=255)

                                              TCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGtt                                              >  1:1930367‑M1/1‑91 (MQ=255)

                                              TCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGtt                                              >  2:1654756‑M1/1‑91 (MQ=255)

                                                GAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGa                                            >  2:347985‑M1/1‑91 (MQ=255)

                                                 AACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAg                                           >  2:3693095‑M1/1‑91 (MQ=255)

                                                 AACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAg                                           >  2:1848748‑M1/1‑91 (MQ=255)

                                                 AACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAg                                           <  2:769298‑M1/91‑1 (MQ=255)

                                                 AACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAg                                           <  2:1733317‑M1/91‑1 (MQ=255)

                                                  actagacaagatgctcattgcatttcgtactagttcgattTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAgg                                          >  2:3633480‑M2/41‑91 (MQ=255)

                                                  ACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAgg                                          <  2:3818468‑M1/91‑1 (MQ=255)

                                                  ACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAgg                                          <  2:1466089‑M1/91‑1 (MQ=255)

                                                   ctagacaagatgctcattgcatttcgtactagttcgattTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGc                                         >  1:2507273‑M2/40‑91 (MQ=255)

                                                   CTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGc                                         >  2:1460027‑M1/1‑91 (MQ=255)

                                                    TAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCg                                        <  1:1755320‑M1/91‑1 (MQ=255)

                                                       acaagatgctcattgcatttcgtactagttcgattTTTTATTGCTTTAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGttt                                     >  2:1617329‑M2/36‑91 (MQ=255)

                                                        aCGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTc                                    >  2:3088788/1‑91 (MQ=255)

                                                        aCGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTc                                    <  2:1133423/91‑1 (MQ=255)

                                                         cGAGATGCAGTGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCa                                   <  1:3555346/91‑1 (MQ=255)

                                                         cGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCa                                   <  1:2824346/91‑1 (MQ=255)

                                                          gAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAg                                  >  1:2573396/1‑91 (MQ=255)

                                                          gAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAg                                  >  1:1172279/1‑91 (MQ=255)

                                                          gAAATGCAAAGAGCATCTTGTCTAGTTCGCTTTTCTAATGTCCTTAGATGTCATATATGTGATCAGAGTAGAATGTGTTGCGGCGttgcgg                                  >  2:1168483/1‑87 (MQ=255)

                                                            aaTGCAATGGGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGaa                                <  1:3790329/91‑1 (MQ=255)

                                                                cAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttg                            >  1:2661346/1‑91 (MQ=255)

                                                                cAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttg                            >  2:3839674/1‑91 (MQ=255)

                                                                cAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttg                            <  1:3100719/91‑1 (MQ=255)

                                                                 aaTGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttgt                           <  1:3644867/91‑1 (MQ=255)

                                                                  aTGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttgtt                          >  1:1039798/1‑91 (MQ=255)

                                                                  aTGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttgtt                          >  1:1055646/1‑91 (MQ=255)

                                                                  aTGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttgtt                          <  2:3135461/91‑1 (MQ=255)

                                                                  aTGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttgtt                          >  2:1297864/1‑91 (MQ=255)

                                                                  aTGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAgttgtt                          <  2:105006/91‑1 (MQ=255)

                                                                     aGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAg                       <  1:1996798/91‑1 (MQ=255)

                                                                        aTCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGaaa                    >  1:3220674/1‑91 (MQ=255)

                                                                         tCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGaaaa                   <  1:1697643/91‑1 (MQ=255)

                                                                          cTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAaag                  <  1:2051243/91‑1 (MQ=255)

                                                                          cTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAaag                  <  1:54123/91‑1 (MQ=255)

                                                                           ttGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAaagt                 <  2:2466911/91‑1 (MQ=255)

                                                                           ttGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAaagt                 <  1:159251/91‑1 (MQ=255)

                                                                            tGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAaagta                >  1:1209042/1‑91 (MQ=255)

                                                                             gTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAaagtaa               >  1:2525938/1‑91 (MQ=255)

                                                                                tagttcgattTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAagtaagta            >  2:2296917‑M2/11‑91 (MQ=255)

                                                                                  gttcgattTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGtaaa          <  2:3203907‑M2/83‑1 (MQ=255)

                                                                                  gttcgattTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGtaaa          <  1:1405734‑M2/83‑1 (MQ=255)

                                                                                  gttcgattTTTGAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTATTTAGAAAAGTAAGtaaa          <  2:3314415‑M2/83‑1 (MQ=255)

                                                                                   ttcgattTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGtaaaa         <  1:95406‑M2/84‑1 (MQ=255)

                                                                                    tcgattTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGtaaaat        >  1:2477928‑M2/7‑91 (MQ=255)

                                                                                     cgattTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTaaataaaata       <  2:503224‑M2/86‑1 (MQ=255)

                                                                                      gattTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGtaaaataa      <  1:3899323‑M2/87‑1 (MQ=255)

                                                                                        ttTCTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGtaaaataaaa    <  1:3190979‑M2/89‑1 (MQ=255)

                                                                                          ttttAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATaaaaaa  <  1:3258564/91‑1 (MQ=255)

TTGTCACTTGGATTCAAATGACATTTTAAATCTAATTATTCATGAATCGAACTAGTACGAAATGCAATGAGCATCTTGTCTAGTTCGATTTTTTAATGCCTAAAAATGTCATATATGTAATCAGAGTAGAAAGTGTTGAGGCGTTTCAGAAGTTGTTTAGAAAAGTAAGTAAAATAAAAAA  >  USA300TCH1516_ALE/127793‑127973

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.