| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | 278631 = | 186 (0.910) | 19 (0.110) | 6/140 | NT | 10.5% | intergenic (+226/+88) | USA300HOU_RS01215/gsiB | hypothetical protein/Glutathione‑binding protein GsiB |
| ? | USA300TCH1516_ALE | 278672 = | 161 (0.900) | intergenic (+267/+47) | USA300HOU_RS01215/gsiB | hypothetical protein/Glutathione‑binding protein GsiB | |||||
Only 100 of 325 total aligned reads displayed.
TATAAAATGAACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTA > USA300TCH1516_ALE/278541‑278721 | ggtatctatttaatcgattatcgaacaacgattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaaa > 1:538476‑M1/90‑91 (MQ=255) ataAAATGAACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAA < 1:1591533‑M1/91‑1 (MQ=255) tatctatttaatcgattatcgaacaacgattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAAc > 2:1225152‑M1/88‑91 (MQ=255) tctatttaatcgattatcgaacaacgattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCa < 1:477752‑M1/6‑1 (MQ=255) tctatttaatcgattatcgaacaacgattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCa < 1:26668‑M1/6‑1 (MQ=255) tctatttaatcgattatcgaacaacgattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCa < 1:587511‑M1/6‑1 (MQ=255) tctatttaatcgattatcgaacaacgattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCa < 1:3233354‑M1/6‑1 (MQ=255) aaTGAACATGATTCACTGAAAGTATGTAATAATCATTATATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTCAACCA > 1:3675741‑M1/1‑91 (MQ=255) aTGAACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCAC < 1:1946164‑M1/91‑1 (MQ=255) gAACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGC > 2:601260‑M1/1‑91 (MQ=255) atttaatcgattatcgaacaacgattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGc < 1:494434‑M1/9‑1 (MQ=255) atttaatcgattatcgaacaacgattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGc < 2:628462‑M1/9‑1 (MQ=255) aaCATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAACCCACGCC > 2:3581156‑M1/1‑91 (MQ=255) aaCATGATTCACTGAAAGTACGTAATAATCCTTTTATTGTAATTCATCAAACAGAAATTAATACAATCATATAAGCCACTTAAACCACCCC > 2:817942‑M1/1‑91 (MQ=255) aCATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCa > 2:1132227/1‑91 (MQ=255) aCATGATTCACTGAAAGTATGAAATAATCATTTTATTGAAATTCATCAGACAGAAATTAGTACAGGCATATAGGTAAGTGATACCCCGCCa < 2:2464880/91‑1 (MQ=255) aTGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATa > 1:2894547/1‑91 (MQ=255) aTTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATc < 2:3097106/91‑1 (MQ=255) aTTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATc < 1:3006965/91‑1 (MQ=255) aTTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATc < 1:424451/91‑1 (MQ=255) ttCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCa < 2:2819208/91‑1 (MQ=255) tCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCat < 1:2593156/91‑1 (MQ=255) tCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCat < 2:855850/91‑1 (MQ=255) cACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCata > 2:897405/1‑91 (MQ=255) aCTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCatat > 2:2149704/1‑91 (MQ=255) aCTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCatat > 1:3575010/1‑91 (MQ=255) cTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATAtt < 1:741988/91‑1 (MQ=255) aGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATg > 1:1554591/1‑91 (MQ=255) aGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATg > 1:3657807/1‑91 (MQ=255) gTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGa < 1:55067/91‑1 (MQ=255) gTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGa < 1:2209269/91‑1 (MQ=255) tATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGAc < 1:1883155/91‑1 (MQ=255) acgattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACt > 2:1031339‑M1/63‑91 (MQ=255) acgattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACt > 2:1801962‑M1/63‑91 (MQ=255) aTGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCgaagtcatccaatatgatt < 2:796151‑M1/91‑20 (MQ=255) aTGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACt > 1:2962126/1‑91 (MQ=255) aTGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACt < 1:3832657/91‑1 (MQ=255) tGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATACTCATATTGGATAACtt > 1:393965/1‑91 (MQ=255) cgattgaacgctaagggagtgtgggacagtgatttatgtctcagccctgcttcgactagaaAAACCACGCCATAATCATATTGGATGACtt > 2:3344990‑M1/62‑91 (MQ=255) gattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaGAACCACGCCATAATCATATTGGATGACTTc > 2:2180360‑M1/61‑91 (MQ=255) gattgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTc > 2:1769549‑M1/61‑91 (MQ=255) gTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCgaagtcatccaatatgattat < 1:1755168‑M1/91‑22 (MQ=255) gTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTc > 2:3163317/1‑91 (MQ=255) gTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTc < 2:492568/91‑1 (MQ=255) taataaTCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCgaagtcatccaatatgattatg < 1:1636268‑M1/91‑23 (MQ=255) attgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCg > 2:728669‑M1/60‑91 (MQ=255) ttgaacgataagggagtgtgggacattgatttatgtctcagccctgcttcaactataaAAACCACGCCATAATCATATTGGATGACTTCgg > 1:3774277‑M1/59‑91 (MQ=255) taatCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCgaagtcatccaatatgattatggcg < 2:1117546‑M1/91‑26 (MQ=255) tCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtgg > 2:2856799‑M2/1‑84 (MQ=255) tCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtgg > 2:3311397‑M2/1‑84 (MQ=255) aTTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtggtt > 1:674190‑M2/1‑82 (MQ=255) aTTTTATTGAAATTCAGCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtggtt > 2:3781141‑M2/1‑82 (MQ=255) ttttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCggcgtggttt > 1:749453‑M2/1‑81 (MQ=255) tttATTGAAATTCATCAAACAGAAATTAATACAGTCATATAAGCAAGTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGtttt < 2:1561684/91‑1 (MQ=255) ttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGttttt < 2:2122666/91‑1 (MQ=255) ttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGttttt < 2:2881882/91‑1 (MQ=255) tGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAg < 2:911491/91‑1 (MQ=255) gAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGt < 1:2476686/91‑1 (MQ=255) aaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTg > 2:2037319/1‑91 (MQ=255) aaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTg > 1:797327/1‑91 (MQ=255) aTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGa < 1:820069/91‑1 (MQ=255) aTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTAGATGACTTCGGCGTGGTTTTTATAGTTGa > 1:3169833/1‑91 (MQ=255) ttCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGaa > 2:1329630/1‑91 (MQ=255) catcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGc < 2:1725492/91‑1 (MQ=255) catcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGc < 1:924123/91‑1 (MQ=255) tcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAg > 1:3101274/1‑91 (MQ=255) tcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAg > 2:267268/1‑91 (MQ=255) aaaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAggg > 2:3150299/1‑91 (MQ=255) aaaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAggg > 2:2556306/1‑91 (MQ=255) aaaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTACGGCGTGGTTCTTATAGTTGAAGCAggg > 2:3731842/1‑91 (MQ=255) cAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTg > 1:2795638/1‑91 (MQ=255) cAGAAAGTATAACAGTCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACGTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTg < 2:3033349/91‑1 (MQ=255) aaaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTgaga < 2:3884566/91‑1 (MQ=255) aaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGAc < 1:640936/91‑1 (MQ=255) aTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACa < 1:1013380/91‑1 (MQ=255) ttAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACAt > 2:1274938/1‑91 (MQ=255) tAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATa > 1:1205583/1‑91 (MQ=255) aaTACAATTATATAAGCAGATTAGACCACGCCATAATCATATTGGATGACTTCGGCGTGGTGTGTATAGTTGAAGCAGGGCTGAGACATaa < 2:3440737/91‑1 (MQ=255) aaTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaa > 1:3172386/1‑91 (MQ=255) aaTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaa > 1:2244897/1‑91 (MQ=255) aaTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaa < 2:2377416/91‑1 (MQ=255) aaTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGAATTCGGCGCGGTTTTTATAGTTGAAGCAGGGCTGAGACATaa > 2:3465571/1‑91 (MQ=255) aTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaaa < 1:2467664/91‑1 (MQ=255) tACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAAt < 1:3862510/91‑1 (MQ=255) aCAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATc < 1:772963/91‑1 (MQ=255) aCAACCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATc < 1:1333650/91‑1 (MQ=255) cAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCa > 2:1290676/1‑91 (MQ=255) aTCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAAt > 1:2048666/1‑91 (MQ=255) cATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGt < 2:2718652/91‑1 (MQ=255) tataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTcc < 1:1856186/91‑1 (MQ=255) ataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTccc > 1:1082313/1‑91 (MQ=255) ataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTccc > 1:240822/1‑91 (MQ=255) aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca < 1:1837733/91‑1 (MQ=255) aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca < 2:2970789/91‑1 (MQ=255) aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca > 2:254163/1‑91 (MQ=255) gCATATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCacac < 1:3250614/91‑1 (MQ=255) cAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACt > 2:354542/1‑91 (MQ=255) ttAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCt > 1:1379412/1‑91 (MQ=255) aaaCCACGCCgaagtcatccaatatgattatggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaa < 1:2715512‑M1/91‑82 (MQ=255) aaaCCACGCCgaagtcatccaatatgattatggcgtggtttaatttgcttatatgattgtattaatttctgtttgatgaatttcaataaaa > 1:1211951‑M1/1‑10 (MQ=255) | TATAAAATGAACATGATTCACTGAAAGTATGTAATAATCATTTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTA > USA300TCH1516_ALE/278541‑278721 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |