BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	278631 =	186 (0.910)	19 (0.110)	6/140	NT	10.5%	intergenic (+226/+88)	USA300HOU_RS01215/gsiB	hypothetical protein/Glutathione‑binding protein GsiB
*	?	USA300TCH1516_ALE	278672 =	161 (0.900)	19 (0.110)	6/140	NT	10.5%	intergenic (+267/+47)	USA300HOU_RS01215/gsiB	hypothetical protein/Glutathione‑binding protein GsiB

Only 100 of 248 total aligned reads displayed.

TTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATACCTT  >  USA300TCH1516_ALE/278582‑278762

tttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGtttt                                                                                            >  2:2666845/1‑91 (MQ=255)

 ttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGttttt                                                                                           <  2:2122666/91‑1 (MQ=255)

 ttATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGttttt                                                                                           <  2:2881882/91‑1 (MQ=255)

     tGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAg                                                                                       <  2:911491/91‑1 (MQ=255)

       aagttCATCAAACAGAAATTAATACAATCATAGAAGCAAATTAATCCACGCCATAAGCATATTGGATGACTTCGGCGTGGTTTTTATAGtt                                                                                     <  2:2770804/88‑1 (MQ=255)

        aaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTg                                                                                    >  1:797256/1‑91 (MQ=255)

        aaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTg                                                                                    >  1:2843796/1‑91 (MQ=255)

        aaTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTg                                                                                    <  2:1275016/91‑1 (MQ=255)

         aTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGa                                                                                   <  1:820069/91‑1 (MQ=255)

         aTTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTAGATGACTTCGGCGTGGTTTTTATAGTTGa                                                                                   >  1:3169833/1‑91 (MQ=255)

          ttCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGaa                                                                                  >  2:1329630/1‑91 (MQ=255)

           tcatcaAACAGAAATTAATACAATCAGATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAg                                                                                 <  2:1514570/91‑1 (MQ=255)

            catcaAACAGAAATTAATACTATCATATAAGCAAATTAAACTACGCCATAATCATATTGGATGACTTCGTCGTGGTTTTATTAGTTTAAGc                                                                                >  2:820105/1‑91 (MQ=255)

            catcaAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGc                                                                                <  2:1725706/91‑1 (MQ=255)

               caAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAgg                                                                             <  1:3106393/91‑1 (MQ=255)

               caAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAgg                                                                             >  1:872491/1‑91 (MQ=255)

               caAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAgg                                                                             <  1:2500682/91‑1 (MQ=255)

                aaaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAggg                                                                            <  1:2761288/91‑1 (MQ=255)

                aaaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAggg                                                                            >  2:3390024/1‑91 (MQ=255)

                aaaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAggg                                                                            >  2:2556305/1‑91 (MQ=255)

                aaaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAggg                                                                            >  2:3150299/1‑91 (MQ=255)

                aaaCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTACGGCGTGGTTCTTATAGTTGAAGCAggg                                                                            >  2:3731842/1‑91 (MQ=255)

                  aCAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCt                                                                          <  2:1163965/91‑1 (MQ=255)

                   cAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTg                                                                         >  1:1608148/1‑91 (MQ=255)

                   cAGAAAGTATAACAGTCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACGTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTg                                                                         <  2:3033349/91‑1 (MQ=255)

                    aGAAATTAATACAATCATATAAGCCAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTga                                                                        <  2:3682832/91‑1 (MQ=255)

                    aGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTAGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTga                                                                        <  2:3246631/91‑1 (MQ=255)

                       aaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGAc                                                                     <  1:640936/91‑1 (MQ=255)

                       aaTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGAc                                                                     >  1:509440/1‑91 (MQ=255)

                        aTTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACa                                                                    <  1:1013380/91‑1 (MQ=255)

                          tAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATa                                                                  >  1:1205583/1‑91 (MQ=255)

                          tAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATa                                                                  <  1:493765/91‑1 (MQ=255)

                           aaTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTATTTATAGTTGAAGCAGGGCTGAGACATaa                                                                 >  1:3172407/1‑91 (MQ=255)

                            aTACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATaaa                                                                <  1:2467664/91‑1 (MQ=255)

                             tACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAAt                                                               <  1:3862510/91‑1 (MQ=255)

                              aCAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATc                                                              <  1:772963/91‑1 (MQ=255)

                                 aTCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAAt                                                           >  1:438461/1‑91 (MQ=255)

                                  tCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATg                                                          >  2:3128441/1‑91 (MQ=255)

                                     tataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTcc                                                       <  2:346146/91‑1 (MQ=255)

                                      ataAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTccc                                                      >  1:240822/1‑91 (MQ=255)

                                       taAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCca                                                     >  2:1264541/1‑91 (MQ=255)

                                        aaGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcac                                                    >  2:3823023/1‑91 (MQ=255)

                                         aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca                                                   >  2:254163/1‑91 (MQ=255)

                                         aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca                                                   <  1:1837733/91‑1 (MQ=255)

                                         aGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCcaca                                                   <  1:37762/91‑1 (MQ=255)

                                          gCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCacac                                                  <  1:455591/91‑1 (MQ=255)

                                          gCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCacac                                                  <  1:3812346/91‑1 (MQ=255)

                                           cAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACt                                                 <  2:1120165/91‑1 (MQ=255)

                                           cAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACt                                                 >  2:354542/1‑91 (MQ=255)

                                             aaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTcc                                               <  1:300029/91‑1 (MQ=255)

                                             aaTTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTcc                                               >  1:1051281/1‑91 (MQ=255)

                                               ttAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCt                                             >  1:1379412/1‑91 (MQ=255)

                                                 AAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTa                                           <  1:960820‑M1/91‑1 (MQ=255)

                                                  AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt                                          <  2:1024324‑M1/91‑1 (MQ=255)

                                                  AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt                                          >  1:3323376‑M1/1‑91 (MQ=255)

                                                  AACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTAt                                          <  2:176413‑M1/91‑1 (MQ=255)

                                                    ccgcGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTGGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCg                                        <  2:578143/88‑1 (MQ=255)

                                                    CCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCg                                        >  1:1480702‑M1/1‑91 (MQ=255)

                                                    CCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCg                                        <  1:3271277‑M1/91‑1 (MQ=255)

                                                      ACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGtt                                      <  2:2393949‑M1/91‑1 (MQ=255)

                                                      ACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGtt                                      <  2:1996679‑M1/91‑1 (MQ=255)

                                                       CGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTc                                     >  1:572480‑M1/1‑91 (MQ=255)

                                                        GCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCa                                    >  1:1000711‑M1/1‑91 (MQ=255)

                                                           gaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATc                                 >  1:1342753‑M2/32‑91 (MQ=255)

                                                           gaagtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATc                                 >  2:76124‑M2/32‑91 (MQ=255)

                                                           gaagtcatccaatatgattatggcgtggttcTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATc                                 >  2:2180360‑M2/32‑91 (MQ=255)

                                                           aTAATCATATTGGATGACTTCGGCGCGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATc                                 >  2:1812092/1‑91 (MQ=255)

                                                            tAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCg                                <  1:1313872/91‑1 (MQ=255)

                                                            tAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCg                                >  2:1602926/1‑91 (MQ=255)

                                                            aagtcatccaatatgattatggcgtggtttTTCTAGTCGAAGCAGGGCTGAGACATAAATCACTGTCCCACACTCCCTTAGCGTTCAATCg                                >  2:3344990‑M2/31‑91 (MQ=255)

                                                             agtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgt                               >  2:1801736‑M2/30‑91 (MQ=255)

                                                             aaTCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgt                               >  1:1742244/1‑91 (MQ=255)

                                                              gtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgtt                              >  1:3201939‑M2/29‑91 (MQ=255)

                                                              gtcatccaatatgattatggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgtt                              >  2:2648460‑M2/29‑91 (MQ=255)

                                                              aTCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgtt                              >  2:1706138/1‑91 (MQ=255)

                                                               tCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCgttg                             <  1:2639231/91‑1 (MQ=255)

                                                                   atTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCg                         <  2:2353590/91‑1 (MQ=255)

                                                                   atTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCg                         >  2:2112414/1‑91 (MQ=255)

                                                                    ttGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGa                        <  2:1932029/91‑1 (MQ=255)

                                                                      ggATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATa                      <  1:2208858/91‑1 (MQ=255)

                                                                      ggATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATa                      <  1:3937978/91‑1 (MQ=255)

                                                                       gATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATaa                     <  2:3579534/91‑1 (MQ=255)

                                                                        aTGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAAt                    >  1:2916141/1‑91 (MQ=255)

                                                                        aTGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAAt                    >  2:705868/1‑91 (MQ=255)

                                                                        aTGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAAt                    >  2:3824416/1‑91 (MQ=255)

                                                                        aTGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAAt                    <  1:3647904/91‑1 (MQ=255)

                                                                         tGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATc                   >  2:1098022/1‑91 (MQ=255)

                                                                           aCTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGa                 <  2:3060378/91‑1 (MQ=255)

                                                                           aCTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGa                 >  1:3605920/1‑91 (MQ=255)

                                                                           aCTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGa                 <  2:948537/91‑1 (MQ=255)

                                                                            cTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGAt                >  1:3218601/1‑91 (MQ=255)

                                                                                ggcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTaaa            >  1:1866218‑M2/11‑91 (MQ=255)

                                                                                 gcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAAt           <  1:631184‑M2/82‑1 (MQ=255)

                                                                                 gcgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAAt           <  2:628462‑M2/82‑1 (MQ=255)

                                                                                  cgtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATa          <  2:486121‑M2/83‑1 (MQ=255)

                                                                                   gtggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAg         >  2:2153796‑M2/8‑91 (MQ=255)

                                                                                     ggtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGAt       >  1:2239527‑M2/6‑91 (MQ=255)

                                                                                      gtttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATa      <  2:285399‑M2/87‑1 (MQ=255)

                                                                                        ttTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATAcc    >  1:538538‑M2/3‑91 (MQ=255)

                                                                                          ttATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATACCtt  >  1:1421103/1‑91 (MQ=255)

TTTATTGAAATTCATCAAACAGAAATTAATACAATCATATAAGCAAATTAAACCACGCCATAATCATATTGGATGACTTCGGCGTGGTTTTTATAGTTGAAGCAGGGCTGAGACATAAATCAATGTCCCACACTCCCTTATCGTTCAATCGTTGTTCGATAATCGATTAAATAGATACCTT  >  USA300TCH1516_ALE/278582‑278762

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.