BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 280894	206 (1.010)	15 (0.090) +TTAATTGGGAGTA	5/134	NT	8.8%	intergenic (‑146/+11)	USA300HOU_RS01225/USA300HOU_RS01230	hypothetical protein/hypothetical protein
*	?	USA300TCH1516_ALE	855632 =	165 (0.810)	15 (0.090) +TTAATTGGGAGTA	5/134	NT	8.8%	intergenic (+163/‑597)	zipA_1/cggR	Cell division protein ZipA/Central glycolytic genes regulator

Only 100 of 246 total aligned reads displayed.

TGGGACGACCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAATGTT  >  USA300TCH1516_ALE/280804‑280983

tggGACGACCAGATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGtttt                                                                                           <  1:3585721/91‑1 (MQ=255)

tggGACGACCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGtttt                                                                                           >  2:2764907/1‑91 (MQ=255)

  ggACGACCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTgg                                                                                         >  1:1829480/1‑91 (MQ=255)

   gacgacCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCAGGACAAAGTAAAGTCATAGCTGTTTTGGt                                                                                        <  2:236986/91‑1 (MQ=255)

     cgacCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAACGTCATAGCCGTTTTGGtat                                                                                      >  2:865746/1‑91 (MQ=255)

      gacCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGtata                                                                                     >  1:960232/1‑91 (MQ=255)

       acCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAg                                                                                    >  1:2141389/1‑91 (MQ=255)

        ccAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGa                                                                                   >  1:2089130/1‑91 (MQ=255)

         cAAGTAAATTTTGCGAAAATATGATCTCTGGCCTACTCCCGATTAAAGAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGAt                                                                                  <  2:13653/91‑1 (MQ=38)

          aaataaatTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATg                                                                                 <  2:2151439/91‑1 (MQ=255)

           aataaatTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGt                                                                                >  1:3021781/1‑91 (MQ=255)

             taaatGTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCa                                                                              <  1:3566357/91‑1 (MQ=255)

               aatTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatt                                                                            >  1:184464/1‑91 (MQ=255)

               aatTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatt                                                                            <  2:592007/91‑1 (MQ=255)

               aatTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatt                                                                            <  1:2768208/91‑1 (MQ=255)

                atgttGCGAAAATATCAGCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCattt                                                                           <  2:1457629/88‑1 (MQ=255)

                 ttttGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAACACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTACAGATGTCattta                                                                          >  2:1675345/1‑91 (MQ=255)

                 ttttGCGAAAATATCATCTCTGGCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAACGTCATAGCTGTTTTGGTATAGATGTCattta                                                                          <  2:179470/91‑1 (MQ=255)

                  tttGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatttat                                                                         >  2:263215/1‑91 (MQ=255)

                   ttGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatttatt                                                                        >  1:3865100/1‑91 (MQ=255)

                   ttGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatttatt                                                                        <  2:3714320/91‑1 (MQ=255)

                   ttGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatttatt                                                                        >  1:1429886/1‑91 (MQ=255)

                    tGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCatttattt                                                                       <  2:3216412/91‑1 (MQ=255)

                     gCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTAtttt                                                                      <  1:2521958/91‑1 (MQ=255)

                     gCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTAtttt                                                                      >  2:1983512/1‑91 (MQ=255)

                       gAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTa                                                                    >  1:2541013/1‑91 (MQ=255)

                       gAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTa                                                                    <  1:605699/91‑1 (MQ=255)

                       gAAAATATCATCTCTGTCCTACTCCCAATCAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTa                                                                    <  2:2755884/91‑1 (MQ=255)

                           atatCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGtt                                                                >  1:2019517/1‑91 (MQ=255)

                           atatCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGtt                                                                <  1:101581/91‑1 (MQ=255)

                           atatCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGtt                                                                <  1:101498/91‑1 (MQ=255)

                            tatCATCTCTGTCCTACTCCCAATTAAAAAAGAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTAGAGATGTCATTTGTTTTTACGttt                                                               >  2:3012759/1‑91 (MQ=255)

                                atcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGtt                                                           >  1:1948187/1‑91 (MQ=255)

                                atcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGtt                                                           >  1:3719623/1‑91 (MQ=255)

                                atcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGtt                                                           >  2:607508/1‑91 (MQ=255)

                                atcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGtt                                                           >  2:3839047/1‑91 (MQ=255)

                                atcTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGtt                                                           >  1:198791/1‑91 (MQ=255)

                                  ctctGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTaa                                                         <  1:3449377/91‑1 (MQ=255)

                                   tctGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTaaa                                                        <  2:978480/91‑1 (MQ=255)

                                    ctGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAAt                                                       <  2:3585881/91‑1 (MQ=255)

                                      gTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATAc                                                     >  1:2005423/1‑91 (MQ=255)

                                        ccTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACtt                                                   <  1:2558891/91‑1 (MQ=255)

                                        ccTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACtt                                                   <  1:68549/91‑1 (MQ=255)

                                         cTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTc                                                  <  2:2331073/91‑1 (MQ=255)

                                          tACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCa                                                 >  2:170917/1‑91 (MQ=255)

                                          tACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCa                                                 <  2:3857126/91‑1 (MQ=255)

                                            cTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCaaa                                               >  1:794369/1‑91 (MQ=255)

                                             tCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAAc                                              >  2:2084039/1‑91 (MQ=255)

                                               ccAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCa                                            >  1:2998463/1‑91 (MQ=255)

                                                  aTTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACt                                         >  1:351244/1‑91 (MQ=255)

                                                  aTTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACt                                         <  1:2487131/91‑1 (MQ=255)

                                                  aTTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACt                                         <  1:1720728/91‑1 (MQ=255)

                                                  aTTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACt                                         >  1:293476/1‑91 (MQ=255)

                                                    tAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGc                                       <  2:1207397/91‑1 (MQ=255)

                                                    tAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGc                                       <  2:2439749/91‑1 (MQ=255)

                                                      aaaaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCaa                                     >  1:1268347/1‑91 (MQ=255)

                                                      aaaaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCaa                                     <  2:3950714/91‑1 (MQ=255)

                                                      aaaaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCaa                                     >  2:1952107/1‑91 (MQ=255)

                                                      aaaaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCaa                                     <  1:2796348/91‑1 (MQ=255)

                                                        aaaCCGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCGAAg                                   >  1:3122883/1‑91 (MQ=255)

                                                        aaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAg                                   >  1:3777396/1‑91 (MQ=255)

                                                        aaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAg                                   >  2:2546510/1‑91 (MQ=255)

                                                        aaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAg                                   >  1:2376940/1‑91 (MQ=255)

                                                        aaaCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAg                                   >  2:47384/1‑91 (MQ=255)

                                                          aCAGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccacca                                 >  1:1338304‑M1/1‑33 (MQ=255)

                                                          aCAGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccacca                                 >  1:3910179‑M1/1‑33 (MQ=255)

                                                          aCAGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccacca                                 >  2:1014165‑M1/1‑33 (MQ=255)

                                                          aCAGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccacca                                 >  2:3302195‑M1/1‑33 (MQ=255)

                                                          aCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGAc                                 <  2:2159082/91‑1 (MQ=255)

                                                          aCAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGAc                                 >  2:2294977/1‑91 (MQ=255)

                                                            aGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccaccaca                               >  1:3699678‑M1/1‑31 (MQ=255)

                                                            aGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccaccaca                               >  1:797358‑M1/1‑31 (MQ=255)

                                                            aGCCATGACAAAGTAAAGTCATAGCTGTTTTttaattgggagtaggacagagatgatattttcgcaaaatttatttggtcgtcccaccaca                               >  1:797661‑M1/1‑31 (MQ=255)

                                                            aGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCg                               <  1:1053281/91‑1 (MQ=255)

                                                            aGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCg                               <  1:897640/91‑1 (MQ=255)

                                                              ccATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCgtg                             >  1:1632313/1‑91 (MQ=255)

                                                                aTGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTa                           >  1:54118/1‑91 (MQ=255)

                                                                   aCAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTAccc                        <  2:1154829/91‑1 (MQ=255)

                                                                   aCAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTAccc                        <  2:3662888/91‑1 (MQ=255)

                                                                   aCAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTAccc                        <  1:119170/91‑1 (MQ=255)

                                                                    cAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCg                       >  1:2326113/1‑91 (MQ=255)

                                                                     aaagtaaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCgg                      <  1:2708209/91‑1 (MQ=255)

                                                                      aagtaaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGc                     >  1:2078476/1‑91 (MQ=255)

                                                                       agtaaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCt                    >  2:295892/1‑91 (MQ=255)

                                                                       agtaaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCt                    >  2:3407886/1‑91 (MQ=255)

                                                                        gtaaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTa                   >  1:1496766/1‑91 (MQ=255)

                                                                         taaagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTAt                  <  2:905468/91‑1 (MQ=255)

                                                                           aagtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATgg                <  1:2866265/91‑1 (MQ=255)

                                                                            agtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGt               >  1:988970/1‑91 (MQ=255)

                                                                            agtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGt               >  2:3108587/1‑91 (MQ=255)

                                                                             gtCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGtt              <  2:665250/91‑1 (MQ=255)

                                                                                aTAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGt           <  2:3764651/91‑1 (MQ=255)

                                                                                  aGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTAt         >  1:3793864/1‑91 (MQ=255)

                                                                                    cTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCa       >  2:3536670/1‑91 (MQ=255)

                                                                                    cTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCa       <  1:3270696/91‑1 (MQ=255)

                                                                                    cTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCa       >  2:2798940/1‑91 (MQ=255)

                                                                                         ttGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAATGtt  >  1:738101/1‑91 (MQ=255)

                                                                                         ttGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAATGtt  <  1:2639446/91‑1 (MQ=255)

                                                                                         ttGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAATGtt  <  1:1125335/91‑1 (MQ=255)

                                                                                         ttGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAATGtt  <  2:1733036/91‑1 (MQ=255)

TGGGACGACCAAATAAATTTTGCGAAAATATCATCTCTGTCCTACTCCCAATTAAAAAACAGCCATGACAAAGTAAAGTCATAGCTGTTTTGGTATAGATGTCATTTATTTTTACGTTTAGTTAAATACTTCAAACCAACTGCAAAGACCGTGTACCCGGCTATGGTTTGTATCAATGTT  >  USA300TCH1516_ALE/280804‑280983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.