BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 319232	206 (1.010)	24 (0.160) +TCATAATAAAATGCATATC	11/122	NT	12.9%	coding (368/405 nt)	USA300TCH1516_00272	hypothetical protein
*	?	USA300TCH1516_ALE	= 2432264	219 (1.080)	24 (0.160) +TCATAATAAAATGCATATC	11/122	NT	12.9%	intergenic (+611/+36)	birA_2/USA300HOU_RS12525	Bifunctional ligase/repressor BirA/hypothetical protein

Only 100 of 275 total aligned reads displayed.

CAAGATCAAACACCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAATTCTTCTATTATATTTAAGATTTAACT  >  USA300TCH1516_ALE/319144‑319322

cAAGATCAAACACCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCg                                                                                          >  1:2618349/1‑91 (MQ=31)

cAAGATCAAACACCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCg                                                                                          >  1:2799234/1‑91 (MQ=31)

 aaGATCAAACACCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGc                                                                                         >  2:824986/1‑91 (MQ=32)

 aaGATCAAACACCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGc                                                                                         >  1:141335/1‑91 (MQ=32)

  aGATCAAACACCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCt                                                                                        <  1:3811607/91‑1 (MQ=33)

  aGATCAAACACCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCt                                                                                        <  2:2977967/91‑1 (MQ=33)

  aGATCAAACACCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCt                                                                                        >  2:2697292/1‑91 (MQ=33)

   gATCAAACACCTTCTTATAGAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCtt                                                                                       <  2:349067/91‑1 (MQ=21)

   gATCAAACACCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCtt                                                                                       <  1:3612146/91‑1 (MQ=34)

     tCAAACACCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCg                                                                                          >  2:3300681/1‑86 (MQ=31)

        aaCACCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTAtttt                                                                                  >  2:2612502/1‑91 (MQ=40)

        aaCACCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTAtttt                                                                                  >  2:1330288/1‑91 (MQ=40)

         anacCTTCTNATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTAttttt                                                                                 <  1:2237977/91‑1 (MQ=255)

         acacCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTAttttt                                                                                 <  1:109001/91‑1 (MQ=255)

          cacCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTc                                                                                >  2:2002617/1‑91 (MQ=255)

          cacCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTc                                                                                >  2:2002508/1‑91 (MQ=255)

          cacCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTc                                                                                <  2:3827377/91‑1 (MQ=255)

           acCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCt                                                                               <  1:53696/91‑1 (MQ=255)

            ccTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCtt                                                                              >  1:194092/1‑91 (MQ=255)

            ccTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCtt                                                                              <  2:796593/91‑1 (MQ=255)

              ttcttATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTgg                                                                            <  2:336753/91‑1 (MQ=255)

              ttcttATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTgg                                                                            >  1:2918133/1‑91 (MQ=255)

                cttATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGAt                                                                          >  2:928472/1‑91 (MQ=255)

                 ttATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGAtt                                                                         >  2:1701285/1‑91 (MQ=255)

                 ttATAAAACTATTAATCGTCTTAGAGTGCATCCTAATACTGAAGCGTTAATTGAATCTTTCCTTATTCAGTTCGCTTGTTTTTATTGGAtt                                                                         >  2:3718994/1‑91 (MQ=14)

                  tataAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGAttt                                                                        <  2:3335205/91‑1 (MQ=255)

                     aaaaCTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCtt                                                                     <  1:2105328/91‑1 (MQ=255)

                      aaaCTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTg                                                                    <  1:1300135/91‑1 (MQ=255)

                        aCTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGTTTTTTTTGta                                                                  >  2:2561485/1‑91 (MQ=255)

                        aCTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGta                                                                  <  1:238181/91‑1 (MQ=255)

                          tATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGtata                                                                >  1:1840095/1‑91 (MQ=255)

                           aTTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTatat                                                               <  2:2783724/91‑1 (MQ=255)

                           aTTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTCTatat                                                               >  2:3653650/1‑91 (MQ=255)

                           aTTAATAGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTCTTCAGTTCGCTTATTTTTCTTGGATTTCTTGTatat                                                               >  2:649648/1‑91 (MQ=255)

                           aTTAATAGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTatat                                                               >  1:3538534/1‑91 (MQ=255)

                            ttAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATc                                                              >  2:70080/1‑91 (MQ=255)

                             tAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTAATCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCa                                                             <  1:3340517/91‑1 (MQ=255)

                              aaTCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCAt                                                            >  1:1767791/1‑91 (MQ=255)

                               aTCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCAtt                                                           >  2:1845407/1‑91 (MQ=255)

                               aTCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCAtt                                                           >  2:2742347/1‑91 (MQ=255)

                                   ttttAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTaa                                                       <  2:1632614/91‑1 (MQ=255)

                                     ttAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGAATTTCTTGTATATCATTTTAAAg                                                     >  2:3025224/1‑91 (MQ=255)

                                      tAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGt                                                    <  1:3435449/91‑1 (MQ=255)

                                       agagTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTg                                                   <  1:1805724/91‑1 (MQ=255)

                                         agTGAATCCTAATACTGATGCGTTAATTGCATCTTTATTTCTTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGAt                                                 >  2:1162148/1‑91 (MQ=255)

                                          gTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATa                                                >  2:2322190/1‑91 (MQ=255)

                                          gTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATa                                                <  2:3538437/91‑1 (MQ=255)

                                            gAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATaaa                                              <  1:2425012/91‑1 (MQ=255)

                                            gAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTACGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATaaa                                              <  1:3143247/91‑1 (MQ=255)

                                              aTCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGa                                            >  2:3362173/1‑91 (MQ=255)

                                              aTCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGa                                            >  1:2316391/1‑91 (MQ=255)

                                               tCCTAATACTGATGCGCTAATTGAATCTTTATTTATTCAGTTtcataataaaatgcatatcaaaaaagctgatttctattaattatttgat                                           <  2:397984‑M1/91‑50 (MQ=255)

                                               tCCTAATACTGATGCGCTAATTGAATCTTTATTTATTCAGTTtcataataaaatgcatatcaaaaaagctgatttctattaattatttgat                                           <  2:1107953‑M1/91‑50 (MQ=255)

                                               tCCTAATACTGATGCGCTAATTGAATCTTTATTTATTCAGTTtcataataaaatgcatatcaaaaaagctgatttctattaattatttgat                                           <  1:3170852‑M1/91‑50 (MQ=255)

                                                ccTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGata                                          >  2:2067898/1‑91 (MQ=255)

                                                ccTAATACTGATGCGCTAATTGAATCTTTATTTATTCAGTTtcataataaaatgcatatcaaaaaagctgatttctattaattatttgata                                          <  1:1643214‑M1/91‑51 (MQ=255)

                                                ccTAATACTGATGCGCTAATTGAATCTTTATTTATTCAGTTtcataataaaatgcatatcaaaaaagctgatttctattaattatttgata                                          <  1:3936839‑M1/91‑51 (MQ=255)

                                                 cTAATACTGATGCGCTAATTGAATCTTTATTTATTCAGTTtcataataaaatgcatatcaaaaaagctgatttctattaattatttgatag                                         <  2:70904‑M1/91‑52 (MQ=255)

                                                  tAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATAtt                                        <  1:118651/91‑1 (MQ=255)

                                                   aaTACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATAttt                                       >  2:1952863/1‑91 (MQ=255)

                                                   aaTACTGATGCGTTAATTGAATCTTTATTTATTCAGTACGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATAttt                                       >  1:3326490/1‑91 (MQ=255)

                                                   aaTACTGATGCGCTAATTGAATCTTTATTTATTCAGTTtcataataaaaggcatataaaaaaagctgatttctattaattatttgatagaa                                       <  2:1031922‑M1/91‑54 (MQ=255)

                                                    aTACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTc                                      <  1:1502770/91‑1 (MQ=255)

                                                    aTACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTc                                      <  2:1357028/91‑1 (MQ=255)

                                                    aTACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTc                                      >  1:1357442/1‑91 (MQ=255)

                                                     tACTGATGCGCTAATTGAATCTTTATTTATTCAGTTtcataataaaatgcatatcaaaaaagctgatttctattaattatttgatagaaat                                     <  1:156950‑M1/91‑56 (MQ=255)

                                                      aCTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGa                                    <  1:768233/91‑1 (MQ=255)

                                                      aCTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGa                                    >  2:2768821/1‑91 (MQ=255)

                                                      aCTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATCTTAAAGTGATAAAGATATTTCGa                                    >  2:1119746/1‑91 (MQ=255)

                                                        tGATGCGCTAATTGAATCTTTATTTATTCAGTTtcataataaaatgcatatcaaaaaagctgatttctattaattatttgatagaaatcag                                  <  1:2443849‑M1/91‑59 (MQ=255)

                                                         gATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAAc                                 <  1:2707702/91‑1 (MQ=255)

                                                           tGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACAt                               >  2:3758055/1‑91 (MQ=255)

                                                           tGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACAt                               >  2:1479384/1‑91 (MQ=255)

                                                           tGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACAt                               <  2:2785548/91‑1 (MQ=255)

                                                           tGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTCCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACAt                               >  2:3469156/1‑91 (MQ=255)

                                                             cGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATaa                             <  1:2733363/91‑1 (MQ=255)

                                                              gTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAAt                            >  1:264486/1‑91 (MQ=255)

                                                              gTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAAt                            <  1:1033425/91‑1 (MQ=255)

                                                              gTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAAt                            >  2:152577/1‑91 (MQ=255)

                                                                 aaTTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAAttct                         >  2:2379079/1‑91 (MQ=255)

                                                                  aTTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAAttctt                        >  1:2033666/1‑91 (MQ=255)

                                                                   ttGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAAttcttc                       >  2:1247339/1‑91 (MQ=255)

                                                                     gAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAGTCCTAATTCTTCta                     <  2:2445142/91‑1 (MQ=255)

                                                                      aaTCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAATTCTTCtat                    <  2:286849/91‑1 (MQ=255)

                                                                      aaTCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAATTCTTCtat                    <  1:1865723/91‑1 (MQ=255)

                                                                       aTCTTTATTTATTCAGTTCGCTTATTTTTCTTGTATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAATTCTTCtatt                   >  2:2464049/1‑91 (MQ=255)

                                                                       aTCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAATTCTTCtatt                   <  2:3929921/91‑1 (MQ=255)

                                                                        tcgttatgtatTCAGTTCGCTTATTTTTGTTGGATTTCTTGTATATCATTTGAAAGTGATAAAGATATTTCGAAACATAATTCTTCtatta                  <  2:1004736/88‑1 (MQ=255)

                                                                        tCTTTATTTATTCAGTTCGCTTATTTATCATGGATTTCTTCTGTAACATTTTAAAGAGATAAAGATATTTCGAAACATAATTCTTTtattg                  >  2:3267003/1‑90 (MQ=255)

                                                                          tttatttaTTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAATTCTTCTATtata                <  2:2108454/91‑1 (MQ=255)

                                                                            tatttattCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAATTCTTCTATTATAtt              <  1:864140/91‑1 (MQ=255)

                                                                             atttattCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAATTCTTCTAATATAttt             >  1:1959988/1‑91 (MQ=255)

                                                                               ttattCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAATTCTTCTATTATATTTaa           <  2:1098198/91‑1 (MQ=255)

                                                                               ttattCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTCCGAAACATAATTCTTCTATTATATTTaa           >  2:2669280/1‑91 (MQ=255)

                                                                                    cAGTTCGCTTATTTTTCTTTTTTTTTTTGTATATCATTTTAAAGTGATAATGATCTTTCGACACCTAATTCTTCTATTATATTTAAGAttc      >  2:3915806/1‑90 (MQ=255)

                                                                                     aGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAATTCTTCTATTATATTTAAGATTTa     <  2:1751819/91‑1 (MQ=255)

                                                                                     aGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAATTCTTCTATTATATTTAAGATTTa     <  2:3192068/91‑1 (MQ=255)

                                                                                      gTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAATTCTTCTATTATATTTAAGATTTaa    <  1:3095222/91‑1 (MQ=255)

                                                                                       ttCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAATTCTTCTATTATATTTAAGATTTAAc   <  2:21656/91‑1 (MQ=255)

                                                                                        tCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAATTCTTCTATTATATTTAAGATTTAACt  <  1:1284207/91‑1 (MQ=255)

CAAGATCAAACACCTTCTTATAAAACTATTAATCGTTTTAGAGTGAATCCTAATACTGATGCGTTAATTGAATCTTTATTTATTCAGTTCGCTTATTTTTCTTGGATTTCTTGTATATCATTTTAAAGTGATAAAGATATTTCGAAACATAATTCTTCTATTATATTTAAGATTTAACT  >  USA300TCH1516_ALE/319144‑319322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.